Thaps_bicluster_0266 Residual: 0.39
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0266 0.39 Thalassiosira pseudonana
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Displaying 1 - 37 of 37
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10325 hypothetical protein

10325 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10325
10501 (DES2) Delta6-FADS-like

10501 - (DES2) Delta6-FADS-like

GO Terms:

GO:0016491, GO:0006636, GO:0016020, GO:0016717, GO:0016213

CD Domains:

Go To Gene Page:

10501
10955 hypothetical protein

10955 - hypothetical protein

GO Terms:

GO:0048037

CD Domains:

Go To Gene Page:

10955
10989 hypothetical protein

10989 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10989
11055 hypothetical protein

11055 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11055
11425 hypothetical protein

11425 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11425
11510 hypothetical protein

11510 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11510
11688 hypothetical protein

11688 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11688
11712 hypothetical protein

11712 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11712
11743 hypothetical protein

11743 - hypothetical protein

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

11743
11965 hypothetical protein

11965 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11965
2052 hypothetical protein

2052 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2052
20752 hypothetical protein

20752 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20752
21388 hypothetical protein

21388 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21388
22571 hypothetical protein

22571 - hypothetical protein

GO Terms:

GO:0003824, GO:0006725, GO:0008199

CD Domains:

Go To Gene Page:

22571
24455 hypothetical protein

24455 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24455
260838 Trichoplein

260838 - Trichoplein

GO Terms:

NA

CD Domains:

Go To Gene Page:

260838
262112 ANK

262112 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

262112
264152

264152 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264152
2797 hypothetical protein

2797 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2797
33437 YjgF_YER057c_UK114_like_2

33437 - YjgF_YER057c_UK114_like_2

GO Terms:

NA

CD Domains:

Go To Gene Page:

33437
3415 hypothetical protein

3415 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3415
36664 hypothetical protein

36664 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

36664
3979 hypothetical protein

3979 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3979
4071 hypothetical protein

4071 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

4071
4555 hypothetical protein

4555 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4555
4969 hypothetical protein

4969 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4969
5602 hypothetical protein

5602 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5602
5838 hypothetical protein

5838 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5838
5970 DUF1619 superfamily

5970 - DUF1619 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5970
6341 CEP19

6341 - CEP19

GO Terms:

NA

CD Domains:

Go To Gene Page:

6341
6344 hypothetical protein

6344 - hypothetical protein

GO Terms:

GO:0003677, GO:0006306, GO:0008170

CD Domains:

Go To Gene Page:

6344
6633 hypothetical protein

6633 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6633
6637 hypothetical protein

6637 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6637
7378 leucine-rich repeat protein

7378 - leucine-rich repeat protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7378
7999 hypothetical protein

7999 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7999
9079 IFT57

9079 - IFT57

GO Terms:

NA

CD Domains:

Go To Gene Page:

9079
GO ID Go Term p-value q-value Cluster
GO:0006636 fatty acid desaturation 0.0123481 1 Thaps_bicluster_0266
GO:0007160 cell-matrix adhesion 0.0184762 1 Thaps_bicluster_0266
GO:0006725 aromatic compound metabolism 0.0225447 1 Thaps_bicluster_0266
GO:0006306 DNA methylation 0.0296321 1 Thaps_bicluster_0266
GO:0007155 cell adhesion 0.0306412 1 Thaps_bicluster_0266
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