bd997 (bd997) rpoC1Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd997	bd_26x41	(bd997) rpoC1	30308	32506	+	rpoC1

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0063

Most Highly Correlated Transcripts

ThpsCp033 (rpoC1) RNA polymerase beta' subunit 1	ThpsCp081 (secA) preprotein translocase subunit SecA 0.9328	ThpsCp135 (secA) preprotein translocase subunit SecA 0.9328	bd2063 (bd2063) NA 0.9322	ThpsCp026 (ycf45) hypothetical protein 0.9322	bd1267 (bd1267) rpoB 0.9314
ThpsCp034 (rpoB) RNA polymerase beta subunit 0.9314	ThpsCp025 (rpl20) ribosomal protein L20 0.9236	ThpsCp080 (rpl27) ribosomal protein L27 0.9182	ThpsCp136 (rpl27) ribosomal protein L27 0.9182

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNAP_largest_subunit_N superfamily		Largest subunit of RNA polymerase (RNAP), N-terminal domain; This region represents the N-terminal...	-	668.07	0	6 - 594	superfamily	267467
RNA_pol_Rpb1_3 superfamily		RNA polymerase Rpb1, domain 3; RNA polymerases catalyse the DNA dependent polymerization of RNA....	-	69.5769	9.71E-14	568 - 693	superfamily	252921
RNA_pol_Rpb1_3 superfamily		RNA polymerase Rpb1, domain 3; RNA polymerases catalyse the DNA dependent polymerization of RNA....	-	69.5769	9.71E-14	568 - 693	superfamily	252921
rpoC1		RNA polymerase beta' subunit	-	870.762	0	2 - 693	multi-dom	214336

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	210799	Not available	Not available	ATCG00180.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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