id: K
name: Transcription
namespace: cog subcategory
type: cog
obsolete: False

Child Functions

COG0085DNA-directed RNA polymerase, beta subunit/140 kD subunit
COG0086DNA-directed RNA polymerase, beta' subunit/160 kD subunit
COG0195Transcription elongation factor
COG0202DNA-directed RNA polymerase, alpha subunit/40 kD subunit
COG0250Transcription antiterminator
COG0317Guanosine polyphosphate pyrophosphohydrolases/synthetases
COG0378Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase
COG0454Histone acetyltransferase HPA2 and related acetyltransferases
COG0513Superfamily II DNA and RNA helicases
COG0515Serine/threonine protein kinase
COG0553Superfamily II DNA/RNA helicases, SNF2 family
COG0557Exoribonuclease R
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
COG0571dsRNA-specific ribonuclease
COG0583Transcriptional regulator
COG0640Predicted transcriptional regulators
COG0745Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
COG0781Transcription termination factor
COG0782Transcription elongation factor
COG0789Predicted transcriptional regulators
COG0819Putative transcription activator
COG0846NAD-dependent protein deacetylases, SIR2 family
COG0864Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
COG1061DNA or RNA helicases of superfamily II
COG1095DNA-directed RNA polymerase, subunit E'
COG1158Transcription termination factor
COG1167Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
COG1191DNA-directed RNA polymerase specialized sigma subunit
COG1197Transcription-repair coupling factor (superfamily II helicase)
COG1199Rad3-related DNA helicases
COG1200RecG-like helicase
COG1221Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
COG1224DNA helicase TIP49, TBP-interacting protein
COG1243Histone acetyltransferase
COG1278Cold shock proteins
COG1293Predicted RNA-binding protein homologous to eukaryotic snRNP
COG1308Transcription factor homologous to NACalpha-BTF3
COG1309Transcriptional regulator
COG1316Transcriptional regulator
COG1318Predicted transcriptional regulators
COG1321Mn-dependent transcriptional regulator
COG1327Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
COG1329Transcriptional regulators, similar to M. xanthus CarD
COG1339Transcriptional regulator of a riboflavin/FAD biosynthetic operon
COG1349Transcriptional regulators of sugar metabolism
COG1378Predicted transcriptional regulators
COG1386Predicted transcriptional regulator containing the HTH domain
COG1395Predicted transcriptional regulator
COG1396Predicted transcriptional regulators
COG1405Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB
COG1414Transcriptional regulator
COG1420Transcriptional regulator of heat shock gene
COG1438Arginine repressor
COG1475Predicted transcriptional regulators
COG1476Predicted transcriptional regulators
COG1497Predicted transcriptional regulator
COG1508DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
COG1510Predicted transcriptional regulators
COG1521Putative transcriptional regulator, homolog of Bvg accessory factor
COG1522Transcriptional regulators
COG1548Predicted transcriptional regulator/sugar kinase
COG1581Archaeal DNA-binding protein
COG1594DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
COG1609Transcriptional regulators
COG1644DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
COG1654Biotin operon repressor
COG1675Transcription initiation factor IIE, alpha subunit
COG1678Putative transcriptional regulator
COG1695Predicted transcriptional regulators
COG1709Predicted transcriptional regulator
COG1725Predicted transcriptional regulators
COG1733Predicted transcriptional regulators
COG1737Transcriptional regulators
COG1758DNA-directed RNA polymerase, subunit K/omega
COG1761DNA-directed RNA polymerase, subunit L
COG1777Predicted transcriptional regulators
COG1802Transcriptional regulators
COG1813Predicted transcription factor, homolog of eukaryotic MBF1
COG1842Phage shock protein A (IM30), suppresses sigma54-dependent transcription
COG1846Transcriptional regulators
COG1940Transcriptional regulator/sugar kinase
COG1954Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
COG1958Small nuclear ribonucleoprotein (snRNP) homolog
COG1959Predicted transcriptional regulator
COG1974SOS-response transcriptional repressors (RecA-mediated autopeptidases)
COG1983Putative stress-responsive transcriptional regulator
COG1996DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)
COG2002Regulators of stationary/sporulation gene expression
COG2012DNA-directed RNA polymerase, subunit H, RpoH/RPB5
COG2093DNA-directed RNA polymerase, subunit E''
COG2101TATA-box binding protein (TBP), component of TFIID and TFIIIB
COG2183Transcriptional accessory protein
COG2186Transcriptional regulators
COG2188Transcriptional regulators
COG2197Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
COG2207AraC-type DNA-binding domain-containing proteins
COG2208Serine phosphatase RsbU, regulator of sigma subunit
COG2345Predicted transcriptional regulator
COG2378Predicted transcriptional regulator
COG2390Transcriptional regulator, contains sigma factor-related N-terminal domain
COG2524Predicted transcriptional regulator, contains C-terminal CBS domains
COG2732Barstar, RNAse (barnase) inhibitor
COG2740Predicted nucleic-acid-binding protein implicated in transcription termination
COG2747Negative regulator of flagellin synthesis (anti-sigma28 factor)
COG2771DNA-binding HTH domain-containing proteins
COG2808Transcriptional regulator
COG2865Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
COG2901Factor for inversion stimulation Fis, transcriptional activator
COG2909ATP-dependent transcriptional regulator
COG2932Predicted transcriptional regulator
COG2944Predicted transcriptional regulator
COG2973Trp operon repressor
COG3060Transcriptional regulator of met regulon
COG3070Regulator of competence-specific genes
COG3160Regulator of sigma D
COG3279Response regulator of the LytR/AlgR family
COG3283Transcriptional regulator of aromatic amino acids metabolism
COG3284Transcriptional activator of acetoin/glycerol metabolism
COG3311Predicted transcriptional regulator
COG3327Phenylacetic acid-responsive transcriptional repressor
COG3343DNA-directed RNA polymerase, delta subunit
COG3355Predicted transcriptional regulator
COG3357Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon
COG3423Predicted transcriptional regulator
COG3432Predicted transcriptional regulator
COG3437Response regulator containing a CheY-like receiver domain and an HD-GYP domain
COG3561Phage anti-repressor protein
COG3604Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
COG3609Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
COG3617Prophage antirepressor
COG3620Predicted transcriptional regulator with C-terminal CBS domains
COG3636Predicted transcriptional regulator
COG3655Predicted transcriptional regulator
COG3682Predicted transcriptional regulator
COG3710DNA-binding winged-HTH domains
COG3711Transcriptional antiterminator
COG3722Transcriptional regulator
COG3829Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
COG3835Sugar diacid utilization regulator
COG3888Predicted transcriptional regulator
COG3901Regulator of nitric oxide reductase transcription
COG3905Predicted transcriptional regulator
COG3933Transcriptional antiterminator
COG4008Predicted metal-binding transcription factor
COG4109Predicted transcriptional regulator containing CBS domains
COG4189Predicted transcriptional regulator
COG4190Predicted transcriptional regulator
COG4219Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component
COG4271Predicted nucleotide-binding protein containing TIR -like domain
COG4463Transcriptional repressor of class III stress genes
COG4465Pleiotropic transcriptional repressor
COG4512Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide
COG4565Response regulator of citrate/malate metabolism
COG4567Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
COG4568Transcriptional antiterminator
COG4578Glucitol operon activator
COG4646DNA methylase
COG4650Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain
COG4725Transcriptional activator, adenine-specific DNA methyltransferase
COG4738Predicted transcriptional regulator
COG4742Predicted transcriptional regulator
COG4776Exoribonuclease II
COG4800Predicted transcriptional regulator with an HTH domain
COG4903Genetic competence transcription factor
COG4936Predicted sensor domain
COG4941Predicted RNA polymerase sigma factor containing a TPR repeat domain
COG4957Predicted transcriptional regulator
COG4977Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
COG4978Transcriptional regulator, effector-binding domain/component
COG5007Predicted transcriptional regulator, BolA superfamily
COG5025Transcription factor of the Forkhead/HNF3 family
COG5033Transcription initiation factor IIF, auxiliary subunit
COG5035Cell cycle control protein
COG5041Casein kinase II, beta subunit
COG5068Regulator of arginine metabolism and related MADS box-containing transcription factors
COG5076Transcription factor involved in chromatin remodeling, contains bromodomain
COG5090Transcription initiation factor IIF, small subunit (RAP30)
COG5094Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)
COG5095Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)
COG5097RNA polymerase II transcriptional regulation mediator
COG5103Cell division control protein, negative regulator of transcription
COG5108Mitochondrial DNA-directed RNA polymerase
COG5111DNA-directed RNA polymerase III, subunit C34
COG5118Transcription initiation factor TFIIIB, Bdp1 subunit
COG5123Transcription initiation factor IIA, gamma subunit
COG5132Cell cycle control protein, G10 family
COG5137Histone chaperone involved in gene silencing
COG5144RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2
COG5147Myb superfamily proteins, including transcription factors and mRNA splicing factors
COG5149Transcription initiation factor IIA, large chain
COG5150Class 2 transcription repressor NC2, beta subunit (Dr1)
COG5151RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1
COG5157RNA polymerase II assessory factor
COG5162Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA)
COG5164Transcription elongation factor
COG5165Nucleosome-binding factor SPN, POB3 subunit
COG5169Heat shock transcription factor
COG5174Transcription initiation factor IIE, beta subunit
COG5175Transcriptional repressor
COG5179Transcription initiation factor TFIID, subunit TAF1
COG5189Putative transcriptional repressor regulating G2/M transition
COG5190TFIIF-interacting CTD phosphatases, including NLI-interacting factor
COG5204Transcription elongation factor SPT4
COG5208CCAAT-binding factor, subunit C
COG5211RNA polymerase II-interacting protein involved in transcription start site selection
COG5220Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3
COG5221Dopey and related predicted leucine zipper transcription factors
COG5224CCAAT-binding factor, subunit B
COG5242RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
COG5247Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog)
COG5248Transcription initiation factor TFIID, subunit TAF13
COG5250RNA polymerase II, fourth largest subunit
COG5251Transcription initiation factor TFIID, subunit TAF11
COG5259RSC chromatin remodeling complex subunit RSC8
COG5290IkappaB kinase complex, IKAP component
COG5296Transcription factor involved in TATA site selection and in elongation by RNA polymerase II
COG5333Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit
COG5340Predicted transcriptional regulator
COG5406Nucleosome binding factor SPN, SPT16 subunit
COG5414TATA-binding protein-associated factor
COG5450Transcription regulator of the Arc/MetJ class
COG5499Predicted transcription regulator containing HTH domain
COG5576Homeodomain-containing transcription factor
COG5601General negative regulator of transcription subunit
COG5624Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA)
COG5625Predicted transcription regulator containing HTH domain
COG5631Predicted transcription regulator, contains HTH domain (MarR family)
COG5641GATA Zn-finger-containing transcription factor
COG5662Predicted transmembrane transcriptional regulator (anti-sigma factor)
COG5665CCR4-NOT transcriptional regulation complex, NOT5 subunit

Parent Functions

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