Welcome to Network Portal

Network Portal provides analysis and visualization tools for selected gene regulatory networks to aid researchers in biological discovery and hypothesis development. [ ..read more]

See it in Action Get Help Get involved

  • Visit Workspace page to give it a try.
  • You can explore all species and associated information here
  • Make sure to check out Gaggle Website for the latest updates.
Organisms
(Click on organism name to access related resources)
Methanococcus maripaludis S2
Genes Transcription Factors Network Organism Page
1863 57 Explore network mmp
Halobacterium salinarum NRC-1
Genes Transcription Factors Network Organism Page
2701 125 Explore network hal
Bacteroides_thetaiotaomicron_VPI-5482
Genes Transcription Factors Network Organism Page
4902 0 Explore network bth
Clostridium_acetobutylicum
Genes Transcription Factors Network Organism Page
3995 259 Explore network cac
Bacillus_cereus_ATCC14579
Genes Transcription Factors Network Organism Page
5501 376 Explore network bce
Bacillus_subtilis
Genes Transcription Factors Network Organism Page
4313 319 Explore network bsu
Synechococcus elongatus PCC 7942
Genes Transcription Factors Network Organism Page
2717 Pending Inferelator Explore network syf
Rhodobacter_sphaeroides_2_4_1
Genes Transcription Factors Network Organism Page
4341 231 Explore network rsp
Pseudomonas_aeruginosa
Genes Transcription Factors Network Organism Page
5646 475 Explore network pae
Escherichia_coli_K12
Genes Transcription Factors Network Organism Page
4497 Pending Inferelator Explore network eco
Campylobacter_jejuni
Genes Transcription Factors Network Organism Page
1711 39 Explore network cje
Geobacter_sulfurreducens
Genes Transcription Factors Network Organism Page
3519 156 Explore network gsu
Desulfovibrio vulgaris Hildenborough
Genes Transcription Factors Network Organism Page
3661 128 Explore network dvu
Methodology

Network Portal integrates identification of conditionally co-regulated group of genes (Performed using cMonkey) and inference of regulatory influences (performed using Inferelator). In addition, it is integrated with MicrobesOnline for genomic information, RegPrecise for collection of manually curated regulatory inferences, and RegPredict for Regulon Inference by Known Position Weight Matrix (PWM). [ ..read more]

Data Sources

ENIGMA MicrobesOnline RegPrecise NCBI KEGG GO Baliga Lab

Network Portal and associated Gaggle Tools are being developed by Baliga Lab at Institute for Systems Biology as part of the DOE KnowledgeBase efforts.