PITA_161 megaCluster: 11 Residual: 0.12 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_161	11	0.12	15	0	0.975982	0

Members

Displaying 1 - 22 of 22

105513 charged multivesicular body protein 7 Details for - - charged multivesicular body protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105513 Tuberculist Genomic Region	14227 FK506 binding protein 2 Details for - - FK506 binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14227 Tuberculist Genomic Region
19718 replication factor C (activator 1) 2 Details for - - replication factor C (activator 1) 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19718 Tuberculist Genomic Region	20778 scavenger receptor class B, member 1 Details for - - scavenger receptor class B, member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20778 Tuberculist Genomic Region
20833 structure specific recognition protein 1 Details for RP23-232L15.5 - structure specific recognition protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20833 Tuberculist Genomic Region	74041 RIKEN cDNA 4632434I11 gene Details for - - RIKEN cDNA 4632434I11 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74041 Tuberculist Genomic Region
109778 biliverdin reductase A Details for RP23-26A12.2 - biliverdin reductase A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109778 Tuberculist Genomic Region	109900 argininosuccinate lyase Details for - - argininosuccinate lyase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109900 Tuberculist Genomic Region
11532 alcohol dehydrogenase 5 (class III), chi polypeptide Details for - - alcohol dehydrogenase 5 (class III), chi polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11532 Tuberculist Genomic Region	12757 clathrin, light polypeptide (Lca) Details for RP23-209M8.4 - clathrin, light polypeptide (Lca) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12757 Tuberculist Genomic Region
14375 X-ray repair complementing defective repair in Chinese hamster cells 6 Details for - - X-ray repair complementing defective repair in Chinese hamster cells 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14375 Tuberculist Genomic Region	19355 RAD1 homolog (S. pombe) Details for - - RAD1 homolog (S. pombe) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19355 Tuberculist Genomic Region
20014 ribophorin II Details for RP23-163J20.6 - ribophorin II GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20014 Tuberculist Genomic Region	22643 zinc finger protein 101 Details for - - zinc finger protein 101 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22643 Tuberculist Genomic Region
52469 cytochrome C oxidase assembly factor 3 Details for RP23-281C18.10-001 - cytochrome C oxidase assembly factor 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52469 Tuberculist Genomic Region	53975 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53975 Tuberculist Genomic Region
67681 mitochondrial ribosomal protein L18 Details for - - mitochondrial ribosomal protein L18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67681 Tuberculist Genomic Region	76568 intraflagellar transport 46 Details for - - intraflagellar transport 46 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76568 Tuberculist Genomic Region
78372 small nuclear ribonucleoprotein 25 (U11/U12) Details for RP23-177M10.3 - small nuclear ribonucleoprotein 25 (U11/U12) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78372 Tuberculist Genomic Region	83409 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 Details for - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 83409 Tuberculist Genomic Region
65098 zinc finger, AN1-type domain 6 Details for - - zinc finger, AN1-type domain 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 65098 Tuberculist Genomic Region	66455 canopy 4 homolog (zebrafish) Details for - - canopy 4 homolog (zebrafish) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66455 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_SP4_Q5_M01273	1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
42	MAAACARAAAA	NA	17000	ATCTCTGTGGT	V$SEF1_C_M00214

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.49	GCGGGA	V$SP2_01_M01783, V$E2F4_Q6_M02090, Smad3.1	1.55	GCGCGAAA	V$E2F1_Q6_01_M00940, V$E2F1_Q6_M00431, V$E2F_Q6_M00427, V$E2F1_Q3_01_M00938, V$E2F1DP1_01_M00736, V$E2F_Q4_M00426, V$E2F_Q3_M00425, V$E2F_03_M00516, V$E2F4DP2_01_M00739, V$E2F4DP1_01_M00738, V$E2F1DP1RB_01_M00740, V$E2F_02_M00050, V$E2F_Q3_01_M00918, V$E2F_Q4_02_M00939, V$E2F4_Q6_M02090, V$E2F_Q6_01_M00920, V$E2F_01_M00024, V$E2F_Q4_01_M00919

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.6	ACGTCG	NA	NA	0.71	GGGGCCAK	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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