PITA_162 megaCluster: 11 Residual: 0.17 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_162	11	0.17	15	0	0.941495	0

Members

Displaying 1 - 27 of 27

224111 UBX domain protein 7 Details for - - UBX domain protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 224111 Tuberculist Genomic Region	26385 G protein-coupled receptor kinase 6 Details for - - G protein-coupled receptor kinase 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26385 Tuberculist Genomic Region
70551 transmembrane and tetratricopeptide repeat containing 4 Details for - - transmembrane and tetratricopeptide repeat containing 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70551 Tuberculist Genomic Region	71924 epsilon-tubulin 1 Details for - - epsilon-tubulin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71924 Tuberculist Genomic Region
73873 family with sequence similarity 161, member A Details for RP23-160F12.1 - family with sequence similarity 161, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73873 Tuberculist Genomic Region	110095 liver glycogen phosphorylase Details for - - liver glycogen phosphorylase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110095 Tuberculist Genomic Region
11676 aldolase C, fructose-bisphosphate Details for - - aldolase C, fructose-bisphosphate GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11676 Tuberculist Genomic Region	140500 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 Details for RP23-242K15.11-002 - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 140500 Tuberculist Genomic Region
14156 flap structure specific endonuclease 1 Details for - - flap structure specific endonuclease 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14156 Tuberculist Genomic Region	14228 FK506 binding protein 4 Details for - - FK506 binding protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14228 Tuberculist Genomic Region
15254 histidine triad nucleotide binding protein 1 Details for RP24-84L18.1 - histidine triad nucleotide binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15254 Tuberculist Genomic Region	18971 polymerase (DNA directed), delta 1, catalytic subunit Details for - - polymerase (DNA directed), delta 1, catalytic subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18971 Tuberculist Genomic Region
227707 cDNA sequence BC005624 Details for RP23-221O14.10-001 - cDNA sequence BC005624 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227707 Tuberculist Genomic Region	23834 cell division cycle 6 Details for RP23-333D2.2 - cell division cycle 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23834 Tuberculist Genomic Region
29870 G two S phase expressed protein 1 Details for - - G two S phase expressed protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 29870 Tuberculist Genomic Region	381306 cDNA sequence BC055324 Details for - - cDNA sequence BC055324 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381306 Tuberculist Genomic Region
60364 downstream neighbor of SON Details for - - downstream neighbor of SON GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 60364 Tuberculist Genomic Region	66193 PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1 Details for RP23-161N17.10-001 - PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66193 Tuberculist Genomic Region
67492 zinc finger, AN1-type domain 4 Details for - - zinc finger, AN1-type domain 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67492 Tuberculist Genomic Region	68047 MPN domain containing Details for RP23-65P17.2 - MPN domain containing GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68047 Tuberculist Genomic Region
69029 single-pass membrane protein with aspartate rich tail 1 Details for - - single-pass membrane protein with aspartate rich tail 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69029 Tuberculist Genomic Region	71706 solute carrier family 46, member 3 Details for - - solute carrier family 46, member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71706 Tuberculist Genomic Region
72103 aprataxin and PNKP like factor Details for - - aprataxin and PNKP like factor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72103 Tuberculist Genomic Region	74041 RIKEN cDNA 4632434I11 gene Details for - - RIKEN cDNA 4632434I11 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74041 Tuberculist Genomic Region
94223 DiGeorge syndrome critical region gene 8 Details for - - DiGeorge syndrome critical region gene 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 94223 Tuberculist Genomic Region	272396 threonyl-tRNA synthetase-like 2 Details for - - threonyl-tRNA synthetase-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 272396 Tuberculist Genomic Region
66455 canopy 4 homolog (zebrafish) Details for - - canopy 4 homolog (zebrafish) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66455 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
SP1_MA0079.2, V_SP1_03_M02281	1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
1500	GCCCCGCCCCY	SP1_MA0079.2, Klf4_MA0039.2, V$SP1_Q6_M00196, V$SP4_Q5_M01273, V$SP1_Q6_01_M00931, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP1_Q2_01_M00933, V$SP1_03_M02281, V$SP1_02_M01303, V$SP2_01_M01783, V$KLF7_03_M02773, V$MAZR_01_M00491, V$ZBP89_Q4_M01816, V$ZFP281_01_M01597, V$SP4_03_M02810, V$UF1H3BETA_Q6_M01068, V$BCL6B_04_M02844, V$GKLF_02_M01588, V$CKROX_Q2_M01175, V$ETF_Q6_M00695, V$SMAD4_04_M02898, V$EGR1_Q6_M01873, V$ZFP410_04_M02936, V$MAZ_Q6_M00649, V$EGR1_06_M02744, V$MAZ_Q6_01_M02023, V$ZFP281_04_M02831, V$SP1_01_M00008, V$KROX_Q6_M00982, V$CACBINDINGPROTEIN_Q6_M00720, V$SP1SP3_Q4_M01219, V$ZNF219_01_M01122, V$FKLF_Q5_M01837, V$E2F3_Q6_M02089, V$WT1_Q6_01_M02036, V$CACD_01_M01113, V$EGR_Q6_M00807, V$ZFP740_03_M02834, Klf7.1, Sp4.1, Bcl6b.2, Smad3.1, Zfp410.1, Egr1.1, Zfp281.2, Zfp740.1, Sp4.2, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, SP4_C2H2_full_monomeric_17_1, SP8_C2H2_DBD_monomeric_12_1, KLF14_C2H2_DBD_monomeric_14_1, KLF13_C2H2_full_monomeric_18_1, ZNF740_C2H2_full_monomeric_10_1	3100	AGAGNAGGMA	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.51	CGGCGT	NA	1.7	CGNCGGCA	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.6	CNTCCC	NA	NA	0.72	YGTCCCTA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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