PITA_170 megaCluster: 8 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_170 8 0.14 15 0 0.965053 0

Members

Displaying 1 - 24 of 24
13666 eukaryotic translation initiation factor 2 alpha kinase 3

Details for - - eukaryotic translation initiation factor 2 alpha kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13666

Tuberculist Genomic Region

14245 lipin 1

Details for - - lipin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14245

Tuberculist Genomic Region

212514 spindle and centriole associated protein 1

Details for - - spindle and centriole associated protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212514

Tuberculist Genomic Region

50773 5',3'-nucleotidase, cytosolic

Details for RP23-392H19.7 - 5',3'-nucleotidase, cytosolic

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50773

Tuberculist Genomic Region

66146 transmembrane protein 57

Details for RP23-191E19.1 - transmembrane protein 57

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66146

Tuberculist Genomic Region

70652 transmembrane protein 144

Details for - - transmembrane protein 144

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70652

Tuberculist Genomic Region

110006 glucuronidase, beta

Details for - - glucuronidase, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110006

Tuberculist Genomic Region

14194 fumarate hydratase 1

Details for - - fumarate hydratase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14194

Tuberculist Genomic Region

15452 hypoxanthine guanine phosphoribosyl transferase

Details for RP23-173F3.3 - hypoxanthine guanine phosphoribosyl transferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15452

Tuberculist Genomic Region

15488 hydroxysteroid (17-beta) dehydrogenase 4

Details for - - hydroxysteroid (17-beta) dehydrogenase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15488

Tuberculist Genomic Region

15985 CD79B antigen

Details for RP23-418O11.7 - CD79B antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15985

Tuberculist Genomic Region

20778 scavenger receptor class B, member 1

Details for - - scavenger receptor class B, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20778

Tuberculist Genomic Region

213068 transmembrane protein 71

Details for - - transmembrane protein 71

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213068

Tuberculist Genomic Region

217558 G2/M-phase specific E3 ubiquitin ligase

Details for - - G2/M-phase specific E3 ubiquitin ligase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217558

Tuberculist Genomic Region

224111 UBX domain protein 7

Details for - - UBX domain protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224111

Tuberculist Genomic Region

23938 mitogen-activated protein kinase kinase 5

Details for - - mitogen-activated protein kinase kinase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23938

Tuberculist Genomic Region

26462 thioredoxin reductase 2

Details for - - thioredoxin reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26462

Tuberculist Genomic Region

320271 suppressor of cancer cell invasion

Details for RP23-322M5.1 - suppressor of cancer cell invasion

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320271

Tuberculist Genomic Region

67460 2,4-dienoyl CoA reductase 1, mitochondrial

Details for RP23-338J24.3 - 2,4-dienoyl CoA reductase 1, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67460

Tuberculist Genomic Region

83485 neugrin, neurite outgrowth associated

Details for - - neugrin, neurite outgrowth associated

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83485

Tuberculist Genomic Region

99167 synovial sarcoma, X breakpoint 2 interacting protein

Details for - - synovial sarcoma, X breakpoint 2 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99167

Tuberculist Genomic Region

11907 arginyltransferase 1

Details for - - arginyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11907

Tuberculist Genomic Region

14375 X-ray repair complementing defective repair in Chinese hamster cells 6

Details for - - X-ray repair complementing defective repair in Chinese hamster cells 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14375

Tuberculist Genomic Region

65098 zinc finger, AN1-type domain 6

Details for - - zinc finger, AN1-type domain 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65098

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_GC_01_M00255, V_SP1_Q4_01_M00932 1, 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.38 AATNTTTCARA NA 0.51 GNSRAGRGGCGG V$ETF_Q6_M00695, V$SP1SP3_Q4_M01219, Bcl6b.2, Smad3.1, Sp4.1, Zfp410.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.18 GACGCG NA 1.28 GCGGCGNG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.76 TTTTNNAC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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