PITA_172 megaCluster: 11 Residual: 0.31

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_172 11 0.31 15 0 0.823397 0.001

Members

Displaying 1 - 33 of 33
11766 adaptor protein complex AP-1, gamma 2 subunit

Details for - - adaptor protein complex AP-1, gamma 2 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11766

Tuberculist Genomic Region

234814 methenyltetrahydrofolate synthetase domain containing

Details for - - methenyltetrahydrofolate synthetase domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234814

Tuberculist Genomic Region

23986 enoyl-Coenzyme A delta isomerase 2

Details for - - enoyl-Coenzyme A delta isomerase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23986

Tuberculist Genomic Region

320332 histone cluster 4, H4

Details for mCG_49272 - histone cluster 4, H4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320332

Tuberculist Genomic Region

56357 isovaleryl coenzyme A dehydrogenase

Details for RP23-172B16.1 - isovaleryl coenzyme A dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56357

Tuberculist Genomic Region

68520 zinc finger, FYVE domain containing 21

Details for - - zinc finger, FYVE domain containing 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68520

Tuberculist Genomic Region

100043772 zinc finger protein 850

Details for mCG_23673 - zinc finger protein 850

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100043772

Tuberculist Genomic Region

105446 guanosine monophosphate reductase 2

Details for - - guanosine monophosphate reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105446

Tuberculist Genomic Region

114143 ATPase, H+ transporting, lysosomal V0 subunit B

Details for RP23-133J9.4 - ATPase, H+ transporting, lysosomal V0 subunit B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114143

Tuberculist Genomic Region

13682 eukaryotic translation initiation factor 4A2

Details for - - eukaryotic translation initiation factor 4A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13682

Tuberculist Genomic Region

16019 immunoglobulin heavy constant mu

Details for - - immunoglobulin heavy constant mu

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16019

Tuberculist Genomic Region

16351 IAP promoted placental gene

Details for RP23-233B9.2 - IAP promoted placental gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16351

Tuberculist Genomic Region

19139 phosphoribosyl pyrophosphate synthetase 1

Details for RP23-137E3.3 - phosphoribosyl pyrophosphate synthetase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19139

Tuberculist Genomic Region

20341 selenium binding protein 1

Details for - - selenium binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20341

Tuberculist Genomic Region

20813 signal recognition particle 14

Details for RP23-450P9.3 - signal recognition particle 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20813

Tuberculist Genomic Region

217303 CD300A antigen

Details for RP23-254J18.3 - CD300A antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217303

Tuberculist Genomic Region

21770 protein phosphatase 2, regulatory subunit B', delta

Details for - - protein phosphatase 2, regulatory subunit B', delta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21770

Tuberculist Genomic Region

225160 THO complex 1

Details for - - THO complex 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225160

Tuberculist Genomic Region

22630 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide

Details for - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22630

Tuberculist Genomic Region

231070 insulin induced gene 1

Details for - - insulin induced gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231070

Tuberculist Genomic Region

244202 NLR family, pyrin domain containing 10

Details for - - NLR family, pyrin domain containing 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244202

Tuberculist Genomic Region

384763 zinc finger protein 667

Details for - - zinc finger protein 667

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 384763

Tuberculist Genomic Region

50799 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

Details for - - solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50799

Tuberculist Genomic Region

56372 RIKEN cDNA 1110004F10 gene

Details for - - RIKEN cDNA 1110004F10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56372

Tuberculist Genomic Region

66156 anaphase promoting complex subunit 11

Details for RP23-84C12.5 - anaphase promoting complex subunit 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66156

Tuberculist Genomic Region

66395 AHNAK nucleoprotein (desmoyokin)

Details for - - AHNAK nucleoprotein (desmoyokin)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66395

Tuberculist Genomic Region

66591 MAD2L1 binding protein

Details for - - MAD2L1 binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66591

Tuberculist Genomic Region

70083 meteorin, glial cell differentiation regulator

Details for - - meteorin, glial cell differentiation regulator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70083

Tuberculist Genomic Region

72128 RIKEN cDNA 2610008E11 gene

Details for - - RIKEN cDNA 2610008E11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72128

Tuberculist Genomic Region

75619 FAST kinase domains 2

Details for - - FAST kinase domains 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75619

Tuberculist Genomic Region

76478 4HAUS augmin-like complex, subunit 8

Details for - - 4HAUS augmin-like complex, subunit 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76478

Tuberculist Genomic Region

97122 histone cluster 2, H4

Details for - - histone cluster 2, H4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 97122

Tuberculist Genomic Region

230098 Rho guanine nucleotide exchange factor (GEF) 39

Details for RP23-195K8.7 - Rho guanine nucleotide exchange factor (GEF) 39

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230098

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_P53_DECAMER_Q2_M00761 0.40625 0.00000183

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0027 WNTCTTTWSTTC NA 20 AAAMWANAAAR NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.25 GTCGCG Zfp161.2, Max.2 1.29 CGNCGCCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.56 NGAGCCNT NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments