PITA_174 megaCluster: 5 Residual: 0.32

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_174 5 0.32 15 0 0.82622 0
Displaying 1 - 50 of 50
15042 histocompatibility 2, T region locus 24

Details for - - histocompatibility 2, T region locus 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15042

Tuberculist Genomic Region

20558 schlafen 4

Details for RP23-308N3.2 - schlafen 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20558

Tuberculist Genomic Region

21826 thrombospondin 2

Details for - - thrombospondin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21826

Tuberculist Genomic Region

241452 dehydrogenase/reductase (SDR family) member 9

Details for RP24-111M20.1 - dehydrogenase/reductase (SDR family) member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241452

Tuberculist Genomic Region

54123 interferon regulatory factor 7

Details for - - interferon regulatory factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54123

Tuberculist Genomic Region

55988 sorting nexin 12

Details for RP23-356J7.1 - sorting nexin 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 55988

Tuberculist Genomic Region

66990 transmembrane protein 134

Details for - - transmembrane protein 134

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66990

Tuberculist Genomic Region

74306 protease, serine 46

Details for - - protease, serine 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74306

Tuberculist Genomic Region

78611 BTB (POZ) domain containing 19

Details for RP23-59L24.3 - BTB (POZ) domain containing 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78611

Tuberculist Genomic Region

83382 sialic acid binding Ig-like lectin E

Details for - - sialic acid binding Ig-like lectin E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83382

Tuberculist Genomic Region

100041482 cadherin 11 pseudogene

Details for - - cadherin 11 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100041482

Tuberculist Genomic Region

11549 adrenergic receptor, alpha 1a

Details for - - adrenergic receptor, alpha 1a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11549

Tuberculist Genomic Region

12483 CD22 antigen

Details for - - CD22 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12483

Tuberculist Genomic Region

14051 eyes absent 4 homolog (Drosophila)

Details for - - eyes absent 4 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14051

Tuberculist Genomic Region

15019 histocompatibility 2, Q region locus 8

Details for - - histocompatibility 2, Q region locus 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15019

Tuberculist Genomic Region

17304 milk fat globule-EGF factor 8 protein

Details for - - milk fat globule-EGF factor 8 protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17304

Tuberculist Genomic Region

18784 phospholipase A2, group V

Details for RP23-352K10.5 - phospholipase A2, group V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18784

Tuberculist Genomic Region

20307 chemokine (C-C motif) ligand 8

Details for RP23-446K18.1 - chemokine (C-C motif) ligand 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20307

Tuberculist Genomic Region

211798 major facilitator superfamily domain containing 9

Details for - - major facilitator superfamily domain containing 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211798

Tuberculist Genomic Region

233575 post-GPI attachment to proteins 2

Details for - - post-GPI attachment to proteins 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233575

Tuberculist Genomic Region

237256 zinc finger CCCH type containing 12D

Details for - - zinc finger CCCH type containing 12D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237256

Tuberculist Genomic Region

244891 S phase cyclin A-associated protein in the ER

Details for - - S phase cyclin A-associated protein in the ER

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244891

Tuberculist Genomic Region

276905 armadillo repeat containing 7

Details for RP23-392H19.6 - armadillo repeat containing 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 276905

Tuberculist Genomic Region

277146 T cell receptor alpha variable 6D-4

Details for - - T cell receptor alpha variable 6D-4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277146

Tuberculist Genomic Region

320534 transmembrane protein 104

Details for RP23-117K15.1 - transmembrane protein 104

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320534

Tuberculist Genomic Region

320832 signal-regulatory protein beta 1A

Details for - - signal-regulatory protein beta 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320832

Tuberculist Genomic Region

381524 expressed sequence AI427809

Details for - - expressed sequence AI427809

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381524

Tuberculist Genomic Region

434325 transmembrane protein 221

Details for - - transmembrane protein 221

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434325

Tuberculist Genomic Region

544817 Rho GTPase activating protein 27

Details for RP23-341C5.7 - Rho GTPase activating protein 27

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 544817

Tuberculist Genomic Region

57248 lymphocyte antigen 6 complex, locus I

Details for - - lymphocyte antigen 6 complex, locus I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57248

Tuberculist Genomic Region

67844 RAB32, member RAS oncogene family

Details for - - RAB32, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67844

Tuberculist Genomic Region

69774 membrane-spanning 4-domains, subfamily A, member 6B

Details for - - membrane-spanning 4-domains, subfamily A, member 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69774

Tuberculist Genomic Region

74202 solute carrier family 29 (nucleoside transporters), member 3

Details for - - solute carrier family 29 (nucleoside transporters), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71279

Tuberculist Genomic Region

76884 filamin binding LIM protein 1

Details for RP23-291H3.1 - filamin binding LIM protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74202

Tuberculist Genomic Region

77976 cytoplasmic FMR1 interacting protein 2

Details for RP23-370F7.1 - cytoplasmic FMR1 interacting protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76884

Tuberculist Genomic Region

791288 NUAK family, SNF1-like kinase, 1

Details for - - NUAK family, SNF1-like kinase, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77976

Tuberculist Genomic Region

81897 predicted gene 9881

Details for - - predicted gene 9881

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791288

Tuberculist Genomic Region

99334 toll-like receptor 9

Details for - - toll-like receptor 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 81897

Tuberculist Genomic Region

11432 zinc finger SCAN domains 29

Details for RP23-232N20.4 - zinc finger SCAN domains 29

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99334

Tuberculist Genomic Region

12982 acid phosphatase 2, lysosomal

Details for RP23-20F9.7 - acid phosphatase 2, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11432

Tuberculist Genomic Region

14990 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

Details for - - colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12982

Tuberculist Genomic Region

15559 histocompatibility 2, M region locus 2

Details for - - histocompatibility 2, M region locus 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14990

Tuberculist Genomic Region

243371 5-hydroxytryptamine (serotonin) receptor 2B

Details for - - 5-hydroxytryptamine (serotonin) receptor 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15559

Tuberculist Genomic Region

70785 leucine rich repeat containing 61

Details for - - leucine rich repeat containing 61

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243371

Tuberculist Genomic Region

71733 DENN/MADD domain containing 1C

Details for - - DENN/MADD domain containing 1C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70785

Tuberculist Genomic Region

99543 sushi domain containing 2

Details for - - sushi domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71733

Tuberculist Genomic Region

14962 olfactomedin-like 3

Details for DN-252N9.4 - olfactomedin-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99543

Tuberculist Genomic Region

246727 complement factor B

Details for RP24-317H19.4 - complement factor B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14962

Tuberculist Genomic Region

50721 2'-5' oligoadenylate synthetase 3

Details for - - 2'-5' oligoadenylate synthetase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246727

Tuberculist Genomic Region

Details for - - sirtuin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50721

Tuberculist Genomic Region

TFs percTargets pValue
V_ZFP281_05_M02935 0.272727 0.0000306
Displaying 1 - 1 of 1
GO Terms
NA
Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.54 CCGGGA NA 0.69 TGCCGGGA NA
Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.55 TGAGAGAC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA
miRNAs percTargets pValue
NA
Log in or register to post comments