PITA_180 megaCluster: 11 Residual: 0.24 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_180	11	0.24	15	0	0.885284	0

Members

Displaying 1 - 27 of 27

330050 family with sequence similarity 185, member A Details for - - family with sequence similarity 185, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 330050 Tuberculist Genomic Region	69125 CCR4-NOT transcription complex, subunit 8 Details for RP23-293I3.1 - CCR4-NOT transcription complex, subunit 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69125 Tuberculist Genomic Region
11632 aryl-hydrocarbon receptor-interacting protein Details for - - aryl-hydrocarbon receptor-interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11632 Tuberculist Genomic Region	11792 apurinic/apyrimidinic endonuclease 1 Details for - - apurinic/apyrimidinic endonuclease 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11792 Tuberculist Genomic Region
11949 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 Details for RP23-119N4.1 - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11949 Tuberculist Genomic Region	12367 caspase 3 Details for - - caspase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12367 Tuberculist Genomic Region
14155 feminization 1 homolog b (C. elegans) Details for - - feminization 1 homolog b (C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14155 Tuberculist Genomic Region	17122 Max dimerization protein 4 Details for - - Max dimerization protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17122 Tuberculist Genomic Region
22083 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Details for - - Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22083 Tuberculist Genomic Region	226422 RAB7, member RAS oncogene family-like 1 Details for - - RAB7, member RAS oncogene family-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226422 Tuberculist Genomic Region
28030 G elongation factor, mitochondrial 1 Details for - - G elongation factor, mitochondrial 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 28030 Tuberculist Genomic Region	52653 NudC domain containing 2 Details for RP23-382C18.4 - NudC domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52653 Tuberculist Genomic Region
54638 coiled-coil domain containing 22 Details for - - coiled-coil domain containing 22 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54638 Tuberculist Genomic Region	56095 FtsJ homolog 3 (E. coli) Details for RP23-418O11.2 - FtsJ homolog 3 (E. coli) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56095 Tuberculist Genomic Region
64143 v-ral simian leukemia viral oncogene homolog B (ras related) Details for - - v-ral simian leukemia viral oncogene homolog B (ras related) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 64143 Tuberculist Genomic Region	66169 translocase of outer mitochondrial membrane 7 homolog (yeast) Details for - - translocase of outer mitochondrial membrane 7 homolog (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66169 Tuberculist Genomic Region
66286 SEC11 homolog C (S. cerevisiae) Details for - - SEC11 homolog C (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66286 Tuberculist Genomic Region	66818 small integral membrane protein 7 Details for - - small integral membrane protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66818 Tuberculist Genomic Region
66975 trafficking protein particle complex 13 Details for - - trafficking protein particle complex 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66975 Tuberculist Genomic Region	67247 mitochondrial amidoxime reducing component 2 Details for - - mitochondrial amidoxime reducing component 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67247 Tuberculist Genomic Region
67466 phosducin-like Details for RP23-464H12.4 - phosducin-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67466 Tuberculist Genomic Region	67515 tetratricopeptide repeat domain 33 Details for - - tetratricopeptide repeat domain 33 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67515 Tuberculist Genomic Region
67608 nuclear prelamin A recognition factor Details for RP23-349B15.5 - nuclear prelamin A recognition factor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67608 Tuberculist Genomic Region	68730 dihydrouridine synthase 1-like (S. cerevisiae) Details for RP23-99M13.5 - dihydrouridine synthase 1-like (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68730 Tuberculist Genomic Region
72284 oral cancer overexpressed 1 Details for - - oral cancer overexpressed 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72284 Tuberculist Genomic Region	76863 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) Details for - - DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76863 Tuberculist Genomic Region
78903 Werner helicase interacting protein 1 Details for RP23-427P14.3 - Werner helicase interacting protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78903 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00000043	TTTTTTTTTWTT	NA	5.5	AACTACAANTNC	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.51	ATCGCG	NA	1.63	TGCCGGCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.59	CGTACG	NA	NA	0.67	TTTNNGAC	mmu-mir-3083-3p	7mer_m8

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments