PITA_200 megaCluster: 7 Residual: 0.16

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_200 7 0.16 15 0 0.951196 0

Members

Displaying 1 - 28 of 28
100855 TBC1 domain family, member 14

Details for - - TBC1 domain family, member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100855

Tuberculist Genomic Region

14339 thymoma viral proto-oncogene 1 interacting protein

Details for - - thymoma viral proto-oncogene 1 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14339

Tuberculist Genomic Region

225326 phosphoinositide-3-kinase, class 3

Details for - - phosphoinositide-3-kinase, class 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225326

Tuberculist Genomic Region

229211 acyl-Coenzyme A dehydrogenase family, member 9

Details for - - acyl-Coenzyme A dehydrogenase family, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229211

Tuberculist Genomic Region

70207 translational activator of mitochondrially encoded cytochrome c oxidase I

Details for RP23-81G14.4 - translational activator of mitochondrially encoded cytochrome c oxidase I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70207

Tuberculist Genomic Region

74626 transmembrane protein 81

Details for - - transmembrane protein 81

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74626

Tuberculist Genomic Region

100504663 autophagy related 14

Details for mCG_6911 - autophagy related 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504663

Tuberculist Genomic Region

104112 ATP citrate lyase

Details for RP23-392I3.9 - ATP citrate lyase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104112

Tuberculist Genomic Region

104479 coiled-coil domain containing 117

Details for RP23-288K19.5 - coiled-coil domain containing 117

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104479

Tuberculist Genomic Region

11409 acyl-Coenzyme A dehydrogenase, short chain

Details for - - acyl-Coenzyme A dehydrogenase, short chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11409

Tuberculist Genomic Region

11766 adaptor protein complex AP-1, gamma 2 subunit

Details for - - adaptor protein complex AP-1, gamma 2 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11766

Tuberculist Genomic Region

12039 branched chain ketoacid dehydrogenase E1, alpha polypeptide

Details for - - branched chain ketoacid dehydrogenase E1, alpha polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12039

Tuberculist Genomic Region

15356 3-hydroxy-3-methylglutaryl-Coenzyme A lyase

Details for RP23-161N17.7 - 3-hydroxy-3-methylglutaryl-Coenzyme A lyase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15356

Tuberculist Genomic Region

18597 pyruvate dehydrogenase E1 alpha 1

Details for RP23-36P16.4 - pyruvate dehydrogenase E1 alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18597

Tuberculist Genomic Region

19286 6-pyruvoyl-tetrahydropterin synthase

Details for - - 6-pyruvoyl-tetrahydropterin synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19286

Tuberculist Genomic Region

233056 zinc finger protein 790

Details for - - zinc finger protein 790

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233056

Tuberculist Genomic Region

330050 family with sequence similarity 185, member A

Details for - - family with sequence similarity 185, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330050

Tuberculist Genomic Region

56453 membrane-bound transcription factor peptidase, site 1

Details for - - membrane-bound transcription factor peptidase, site 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56453

Tuberculist Genomic Region

58193 exostoses (multiple)-like 2

Details for - - exostoses (multiple)-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58193

Tuberculist Genomic Region

66335 ATPase, H+ transporting, lysosomal V1 subunit C1

Details for - - ATPase, H+ transporting, lysosomal V1 subunit C1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66335

Tuberculist Genomic Region

66905 perilipin 3

Details for - - perilipin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66905

Tuberculist Genomic Region

67143 IKAROS family zinc finger 5

Details for - - IKAROS family zinc finger 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67143

Tuberculist Genomic Region

67452 patatin-like phospholipase domain containing 8

Details for - - patatin-like phospholipase domain containing 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67452

Tuberculist Genomic Region

67510 trans-golgi network vesicle protein 23B

Details for RP23-428I5.3 - trans-golgi network vesicle protein 23B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67510

Tuberculist Genomic Region

67727 syntaxin 17

Details for RP23-122N18.3 - syntaxin 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67727

Tuberculist Genomic Region

68839 ankyrin repeat domain 46

Details for - - ankyrin repeat domain 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68839

Tuberculist Genomic Region

72354 tetratricopeptide repeat domain 4

Details for RP23-97O7.5 - tetratricopeptide repeat domain 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72354

Tuberculist Genomic Region

78255 Ral GEF with PH domain and SH3 binding motif 2

Details for - - Ral GEF with PH domain and SH3 binding motif 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78255

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
TFAP2B_TFAP_DBD_dimeric_11_1 0.642857 0.00000139

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00018 TTTTTTTNTWAT NA 1.5 TTTMTGYNTTCT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.08 TCGCGT NA 1.17 CCGAACCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.65 TGTNGG NA NA 0.69 CTATYNTA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-760 0.791667 0.0000605

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-495 0.25 0.0000208

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