PITA_21 megaCluster: 11 Residual: 0.23

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_21 11 0.23 15 0 0.890528 0

Members

Displaying 1 - 24 of 24
100038519 predicted gene 9900

Details for - - predicted gene 9900

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100038519

Tuberculist Genomic Region

107197 expressed sequence AI462493

Details for - - expressed sequence AI462493

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107197

Tuberculist Genomic Region

11949 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

Details for RP23-119N4.1 - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11949

Tuberculist Genomic Region

12367 caspase 3

Details for - - caspase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12367

Tuberculist Genomic Region

17997 neural precursor cell expressed, developmentally down-regulated gene 1

Details for - - neural precursor cell expressed, developmentally down-regulated gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17997

Tuberculist Genomic Region

20527 solute carrier family 2 (facilitated glucose transporter), member 3

Details for - - solute carrier family 2 (facilitated glucose transporter), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20527

Tuberculist Genomic Region

20744 spermatid perinuclear RNA binding protein

Details for RP23-391H10.1 - spermatid perinuclear RNA binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20744

Tuberculist Genomic Region

22235 UDP-glucose dehydrogenase

Details for - - UDP-glucose dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22235

Tuberculist Genomic Region

22278 upstream transcription factor 1

Details for - - upstream transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22278

Tuberculist Genomic Region

227197 NADH dehydrogenase (ubiquinone) Fe-S protein 1

Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227197

Tuberculist Genomic Region

235281 sodium channel, voltage-gated, type III, beta

Details for - - sodium channel, voltage-gated, type III, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235281

Tuberculist Genomic Region

245670 Ras-related GTP binding B

Details for RP23-180D16.3 - Ras-related GTP binding B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245670

Tuberculist Genomic Region

320204 methyltransferase like 20

Details for RP23-355N5.5 - methyltransferase like 20

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320204

Tuberculist Genomic Region

64143 v-ral simian leukemia viral oncogene homolog B (ras related)

Details for - - v-ral simian leukemia viral oncogene homolog B (ras related)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64143

Tuberculist Genomic Region

66126 elongation factor 1 homolog (ELF1, S. cerevisiae)

Details for - - elongation factor 1 homolog (ELF1, S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66126

Tuberculist Genomic Region

66155 ubiquitin-fold modifier conjugating enzyme 1

Details for - - ubiquitin-fold modifier conjugating enzyme 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66155

Tuberculist Genomic Region

67466 phosducin-like

Details for RP23-464H12.4 - phosducin-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67466

Tuberculist Genomic Region

67487 DEAH (Asp-Glu-Ala-His) box polypeptide 40

Details for RP23-366M19.4 - DEAH (Asp-Glu-Ala-His) box polypeptide 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67487

Tuberculist Genomic Region

67891 ribosomal protein L4

Details for - - ribosomal protein L4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67891

Tuberculist Genomic Region

68730 dihydrouridine synthase 1-like (S. cerevisiae)

Details for RP23-99M13.5 - dihydrouridine synthase 1-like (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68730

Tuberculist Genomic Region

68911 pygopus 2

Details for - - pygopus 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68911

Tuberculist Genomic Region

78100 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils

Details for - - Myb/SANT-like DNA-binding domain containing 4 with coiled-coils

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78100

Tuberculist Genomic Region

99889 ADP-ribosylation factor interacting protein 1

Details for - - ADP-ribosylation factor interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99889

Tuberculist Genomic Region

56794 2-hydroxyacyl-CoA lyase 1

Details for - - 2-hydroxyacyl-CoA lyase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56794

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Hoxc10.1 0.130435 0.0000309

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000052 CTTTTTTTTTT NA 0.64 TTAANTTTGAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.04 CGCGTC NA 1.17 CGAAGACG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.84 AGTTAAGA NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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