PITA_23 megaCluster: 11 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_23 11 0.18 15 0 0.943682 0

Members

Displaying 1 - 27 of 27
13194 CCCTC-binding factor

Details for - - CCCTC-binding factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13018

Tuberculist Genomic Region

13205 damage specific DNA binding protein 1

Details for - - damage specific DNA binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13194

Tuberculist Genomic Region

15473 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked

Details for RP23-158L19.4 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13205

Tuberculist Genomic Region

18020 heat-responsive protein 12

Details for - - heat-responsive protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15473

Tuberculist Genomic Region

226419 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein

Details for - - nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18020

Tuberculist Genomic Region

269470 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3

Details for - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226419

Tuberculist Genomic Region

30045 WD repeat domain 3

Details for - - WD repeat domain 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269470

Tuberculist Genomic Region

56453 DnaJ (Hsp40) homolog, subfamily C, member 12

Details for - - DnaJ (Hsp40) homolog, subfamily C, member 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30045

Tuberculist Genomic Region

66870 membrane-bound transcription factor peptidase, site 1

Details for - - membrane-bound transcription factor peptidase, site 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56453

Tuberculist Genomic Region

66978 serpine1 mRNA binding protein 1

Details for - - serpine1 mRNA binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66870

Tuberculist Genomic Region

67510 Luc7 homolog (S. cerevisiae)-like

Details for - - Luc7 homolog (S. cerevisiae)-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66978

Tuberculist Genomic Region

70829 trans-golgi network vesicle protein 23B

Details for RP23-428I5.3 - trans-golgi network vesicle protein 23B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67510

Tuberculist Genomic Region

73419 coiled-coil domain containing 93

Details for - - coiled-coil domain containing 93

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70829

Tuberculist Genomic Region

75296 RIKEN cDNA 1700052N19 gene

Details for - - RIKEN cDNA 1700052N19 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73419

Tuberculist Genomic Region

78894 Fgfr1 oncogene partner

Details for - - Fgfr1 oncogene partner

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75296

Tuberculist Genomic Region

80515 acetoacetyl-CoA synthetase

Details for - - acetoacetyl-CoA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78894

Tuberculist Genomic Region

14661 chromodomain helicase DNA binding protein 3, opposite strand

Details for MNCb-2875 - chromodomain helicase DNA binding protein 3, opposite strand

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80515

Tuberculist Genomic Region

19352 glutamate dehydrogenase 1

Details for - - glutamate dehydrogenase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14661

Tuberculist Genomic Region

20527 RAB geranylgeranyl transferase, b subunit

Details for - - RAB geranylgeranyl transferase, b subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19352

Tuberculist Genomic Region

20744 solute carrier family 2 (facilitated glucose transporter), member 3

Details for - - solute carrier family 2 (facilitated glucose transporter), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20527

Tuberculist Genomic Region

235281 spermatid perinuclear RNA binding protein

Details for RP23-391H10.1 - spermatid perinuclear RNA binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20744

Tuberculist Genomic Region

16211 sodium channel, voltage-gated, type III, beta

Details for - - sodium channel, voltage-gated, type III, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235281

Tuberculist Genomic Region

22083 karyopherin (importin) beta 1

Details for RP23-81D2.3 - karyopherin (importin) beta 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16211

Tuberculist Genomic Region

227197 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

Details for - - Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22083

Tuberculist Genomic Region

50799 NADH dehydrogenase (ubiquinone) Fe-S protein 1

Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227197

Tuberculist Genomic Region

66156 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

Details for - - solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50799

Tuberculist Genomic Region

Details for RP23-84C12.5 - anaphase promoting complex subunit 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66156

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_DTYPEPA_B_M00334 0.153846 0.000031

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
31 TTWTTTTTANT NA 160 CTTCCTCYCCGC NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.39 CGCGAT NA 1.58 CCGNCGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.58 GTTAGT NA NA 0.75 TGTTGAGT NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-338-5p 0.695652 0.0000431

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-1839-3p 0.416667 0.00000013

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