PITA_230 megaCluster: 10 Residual: 0.20

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_230 10 0.20 15 0 0.931042 0

Members

Displaying 1 - 45 of 45
104725 serine palmitoyltransferase, small subunit A

Details for - - serine palmitoyltransferase, small subunit A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104725

Tuberculist Genomic Region

107769 transmembrane 6 superfamily member 1

Details for - - transmembrane 6 superfamily member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107769

Tuberculist Genomic Region

117198 influenza virus NS1A binding protein

Details for - - influenza virus NS1A binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 117198

Tuberculist Genomic Region

14790 gene rich cluster, C10 gene

Details for - - gene rich cluster, C10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14790

Tuberculist Genomic Region

14873 glutathione S-transferase omega 1

Details for - - glutathione S-transferase omega 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14873

Tuberculist Genomic Region

15216 hemochromatosis

Details for RP23-480B19.9 - hemochromatosis

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15216

Tuberculist Genomic Region

15384 heterogeneous nuclear ribonucleoprotein A/B

Details for RP23-79E13.1 - heterogeneous nuclear ribonucleoprotein A/B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15384

Tuberculist Genomic Region

18242 ornithine aminotransferase

Details for - - ornithine aminotransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18242

Tuberculist Genomic Region

21855 translocase of inner mitochondrial membrane 17b

Details for RP23-198C2.2 - translocase of inner mitochondrial membrane 17b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21855

Tuberculist Genomic Region

23874 phenylalanyl-tRNA synthetase, beta subunit

Details for - - phenylalanyl-tRNA synthetase, beta subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23874

Tuberculist Genomic Region

245688 retinoblastoma binding protein 7

Details for RP23-436I3.1 - retinoblastoma binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245688

Tuberculist Genomic Region

26451 ribosomal protein L27A

Details for - - ribosomal protein L27A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26451

Tuberculist Genomic Region

26465 zinc finger protein 146

Details for - - zinc finger protein 146

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26465

Tuberculist Genomic Region

269423 RIKEN cDNA 3110057O12 gene

Details for - - RIKEN cDNA 3110057O12 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269423

Tuberculist Genomic Region

329506 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2

Details for RP23-34E24.1 - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329506

Tuberculist Genomic Region

330503 predicted gene 5113

Details for - - predicted gene 5113

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330503

Tuberculist Genomic Region

381650 THAP domain containing 6

Details for - - THAP domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381650

Tuberculist Genomic Region

52705 KRR1, small subunit (SSU) processome component, homolog (yeast)

Details for - - KRR1, small subunit (SSU) processome component, homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52705

Tuberculist Genomic Region

53332 myotubularin related protein 1

Details for RP23-125F4.1 - myotubularin related protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53332

Tuberculist Genomic Region

54138 ataxin 10

Details for - - ataxin 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54138

Tuberculist Genomic Region

54725 cell adhesion molecule 1

Details for - - cell adhesion molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54725

Tuberculist Genomic Region

56248 adenylate kinase 3

Details for - - adenylate kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56248

Tuberculist Genomic Region

65113 Nedd4 family interacting protein 1

Details for - - Nedd4 family interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65113

Tuberculist Genomic Region

65972 interferon gamma inducible protein 30

Details for - - interferon gamma inducible protein 30

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65972

Tuberculist Genomic Region

66146 transmembrane protein 57

Details for RP23-191E19.1 - transmembrane protein 57

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66146

Tuberculist Genomic Region

67420 fatty acyl CoA reductase 1

Details for - - fatty acyl CoA reductase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67420

Tuberculist Genomic Region

67738 peptidylprolyl isomerase D (cyclophilin D)

Details for - - peptidylprolyl isomerase D (cyclophilin D)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67738

Tuberculist Genomic Region

67973 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)

Details for - - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67973

Tuberculist Genomic Region

68135 eukaryotic translation initiation factor 3, subunit H

Details for - - eukaryotic translation initiation factor 3, subunit H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68135

Tuberculist Genomic Region

68631 crystallin, lambda 1

Details for - - crystallin, lambda 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68631

Tuberculist Genomic Region

68659 family with sequence similarity 198, member B

Details for - - family with sequence similarity 198, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68659

Tuberculist Genomic Region

72117 N(alpha)-acetyltransferase 50, NatE catalytic subunit

Details for - - N(alpha)-acetyltransferase 50, NatE catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72117

Tuberculist Genomic Region

72981 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)

Details for - - protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72981

Tuberculist Genomic Region

75296 Fgfr1 oncogene partner

Details for - - Fgfr1 oncogene partner

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75296

Tuberculist Genomic Region

75416 NOP14 nucleolar protein

Details for - - NOP14 nucleolar protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75416

Tuberculist Genomic Region

76582 importin 11

Details for - - importin 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76582

Tuberculist Genomic Region

104130 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11

Details for RP23-333P16.5 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104130

Tuberculist Genomic Region

11428 aconitase 1

Details for RP23-9F23.1 - aconitase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11428

Tuberculist Genomic Region

15182 histone deacetylase 2

Details for - - histone deacetylase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15182

Tuberculist Genomic Region

15452 hypoxanthine guanine phosphoribosyl transferase

Details for RP23-173F3.3 - hypoxanthine guanine phosphoribosyl transferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15452

Tuberculist Genomic Region

17449 malate dehydrogenase 1, NAD (soluble)

Details for RP23-198N8.1 - malate dehydrogenase 1, NAD (soluble)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17449

Tuberculist Genomic Region

56298 atlastin GTPase 2

Details for - - atlastin GTPase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56298

Tuberculist Genomic Region

69554 kelch domain containing 2

Details for - - kelch domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69554

Tuberculist Genomic Region

213068 transmembrane protein 71

Details for - - transmembrane protein 71

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213068

Tuberculist Genomic Region

320506 LMBR1 domain containing 2

Details for - - LMBR1 domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320506

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
SOX7_HMG_full_dimeric_17_1 0.136364 0.0000403

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000000012 AAARAAAAARAW V$ZFP105_03_M02827, Zfp105.1 0.000093 AGGCYCNGCCCC Zfx_MA0146.1, SP1_MA0079.2, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$GC_01_M00255, V$SP1_Q4_01_M00932, V$SP4_Q5_M01273, V$SP1_Q2_01_M00933, V$SP2_01_M01783, V$SP1_03_M02281, V$SP1_02_M01303, V$ETF_Q6_M00695, V$SP1_01_M00008, Klf7.1, Sp4.1, Egr1.1, Bcl6b.2, Zfp410.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.43 CGCGTC NA 1.49 CGCGNCGT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 CTTGAT NA NA 0.59 TTGATTGG NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-467f 0.692308 0.0000286

3p UTR TargetScan

miRNAs percTargets pValue
NA

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