PITA_45 megaCluster: 8 Residual: 0.22

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_45 8 0.22 15 0 0.908811 0

Members

Displaying 1 - 31 of 31
105352 WD repeat domain 92

Details for RP23-32H19.3 - WD repeat domain 92

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103784

Tuberculist Genomic Region

108735 dual specificity phosphatase 22

Details for RP23-217J3.1 - dual specificity phosphatase 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105352

Tuberculist Genomic Region

11364 SFT2 domain containing 2

Details for - - SFT2 domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108735

Tuberculist Genomic Region

11764 acyl-Coenzyme A dehydrogenase, medium chain

Details for - - acyl-Coenzyme A dehydrogenase, medium chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11364

Tuberculist Genomic Region

14712 adaptor protein complex AP-1, beta 1 subunit

Details for RP23-64E17.3 - adaptor protein complex AP-1, beta 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11764

Tuberculist Genomic Region

15184 glyceronephosphate O-acyltransferase

Details for - - glyceronephosphate O-acyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14712

Tuberculist Genomic Region

170718 histone deacetylase 5

Details for RP23-461C4.2 - histone deacetylase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15184

Tuberculist Genomic Region

170936 isocitrate dehydrogenase 3 (NAD+) beta

Details for RP23-20A6.5 - isocitrate dehydrogenase 3 (NAD+) beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170718

Tuberculist Genomic Region

17692 zinc finger protein 369

Details for - - zinc finger protein 369

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170936

Tuberculist Genomic Region

19691 male-specific lethal 3 homolog (Drosophila)

Details for RP23-125I7.1 - male-specific lethal 3 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17692

Tuberculist Genomic Region

20492 RecQ protein-like

Details for - - RecQ protein-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19691

Tuberculist Genomic Region

212114 stem-loop binding protein

Details for - - stem-loop binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20492

Tuberculist Genomic Region

218885 NHL repeat containing 3

Details for - - NHL repeat containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212114

Tuberculist Genomic Region

227154 oxidoreductase NAD-binding domain containing 1

Details for - - oxidoreductase NAD-binding domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218885

Tuberculist Genomic Region

53330 STE20-related kinase adaptor beta

Details for - - STE20-related kinase adaptor beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227154

Tuberculist Genomic Region

57320 vesicle-associated membrane protein 4

Details for - - vesicle-associated membrane protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53330

Tuberculist Genomic Region

68394 Parkinson disease (autosomal recessive, early onset) 7

Details for RP23-272N19.5 - Parkinson disease (autosomal recessive, early onset) 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57320

Tuberculist Genomic Region

68729 coiled-coil domain containing 163

Details for RP23-109A3.1 - coiled-coil domain containing 163

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68394

Tuberculist Genomic Region

69478 tripartite motif-containing 37

Details for RP23-475B18.1 - tripartite motif-containing 37

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68729

Tuberculist Genomic Region

69786 RIKEN cDNA 2300009A05 gene

Details for - - RIKEN cDNA 2300009A05 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69478

Tuberculist Genomic Region

71151 Tp53rk binding protein

Details for - - Tp53rk binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69786

Tuberculist Genomic Region

71449 exoribonuclease 2

Details for - - exoribonuclease 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71151

Tuberculist Genomic Region

72572 methyltransferase like 13

Details for - - methyltransferase like 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71449

Tuberculist Genomic Region

74551 spermatogenesis associated, serine-rich 2

Details for - - spermatogenesis associated, serine-rich 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72572

Tuberculist Genomic Region

76972 phosphoenolpyruvate carboxykinase 2 (mitochondrial)

Details for - - phosphoenolpyruvate carboxykinase 2 (mitochondrial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74551

Tuberculist Genomic Region

94219 RIKEN cDNA 2810008D09 gene

Details for - - RIKEN cDNA 2810008D09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76972

Tuberculist Genomic Region

110639 cyclin M2

Details for - - cyclin M2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94219

Tuberculist Genomic Region

215243 phosphoribosyl pyrophosphate synthetase 2

Details for RP23-139P21.4 - phosphoribosyl pyrophosphate synthetase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110639

Tuberculist Genomic Region

84505 TRAF3 interacting protein 3

Details for RP23-282D4.1 - TRAF3 interacting protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215243

Tuberculist Genomic Region

68058 SET domain, bifurcated 1

Details for - - SET domain, bifurcated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 84505

Tuberculist Genomic Region

Details for - - chromodomain helicase DNA binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68058

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
TFCP2_CP2_full_dimer-of-dimers_16_1 0.266667 0.0000039

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
5100 TTAAAACAAT Sox5_MA0087.1 770 GMAGCCKCCGC V$ETF_Q6_M00695

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.56 CGTCCG MIZF_MA0131.1, V$MIZF_01_M01182 1.58 CGTCCGCA MIZF_MA0131.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.63 GNNGTTGT NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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