PITA_48 megaCluster: 5 Residual: 0.33

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_48 5 0.33 13 0.001 0.781062 0.011

Members

Displaying 1 - 38 of 38
100038947 signal-regulatory protein beta 1-like

Details for - - signal-regulatory protein beta 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100038947

Tuberculist Genomic Region

100302498 small nucleolar RNA, H/ACA box 21

Details for - - small nucleolar RNA, H/ACA box 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100302498

Tuberculist Genomic Region

100502843 predicted gene, 19408

Details for - - predicted gene, 19408

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100502843

Tuberculist Genomic Region

106338 NOL1/NOP2/Sun domain family member 3

Details for - - NOL1/NOP2/Sun domain family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106338

Tuberculist Genomic Region

110557 histocompatibility 2, Q region locus 6

Details for - - histocompatibility 2, Q region locus 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110557

Tuberculist Genomic Region

116871 metastasis associated 3

Details for - - metastasis associated 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 116871

Tuberculist Genomic Region

13481 dolichol-phosphate (beta-D) mannosyltransferase 2

Details for RP23-255P20.5 - dolichol-phosphate (beta-D) mannosyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13481

Tuberculist Genomic Region

14962 complement factor B

Details for RP24-317H19.4 - complement factor B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14962

Tuberculist Genomic Region

14977 solute carrier family 39 (zinc transporter), member 7

Details for - - solute carrier family 39 (zinc transporter), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14977

Tuberculist Genomic Region

15019 histocompatibility 2, Q region locus 8

Details for - - histocompatibility 2, Q region locus 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15019

Tuberculist Genomic Region

15559 5-hydroxytryptamine (serotonin) receptor 2B

Details for - - 5-hydroxytryptamine (serotonin) receptor 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15559

Tuberculist Genomic Region

20304 chemokine (C-C motif) ligand 5

Details for RP23-320E6.2 - chemokine (C-C motif) ligand 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20304

Tuberculist Genomic Region

211556 adaptor-related protein complex 1 associated regulatory protein

Details for - - adaptor-related protein complex 1 associated regulatory protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211556

Tuberculist Genomic Region

22259 nuclear receptor subfamily 1, group H, member 3

Details for RP23-20F9.5 - nuclear receptor subfamily 1, group H, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22259

Tuberculist Genomic Region

223920 sterol O-acyltransferase 2

Details for - - sterol O-acyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223920

Tuberculist Genomic Region

237256 zinc finger CCCH type containing 12D

Details for - - zinc finger CCCH type containing 12D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237256

Tuberculist Genomic Region

239706 methyltransferase like 22

Details for - - methyltransferase like 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 239706

Tuberculist Genomic Region

243371 leucine rich repeat containing 61

Details for - - leucine rich repeat containing 61

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243371

Tuberculist Genomic Region

26970 phospholipase A2, group IIE

Details for RP23-352K10.7 - phospholipase A2, group IIE

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26970

Tuberculist Genomic Region

30839 F-box and WD-40 domain protein 5

Details for RP23-47P18.14-001 - F-box and WD-40 domain protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30839

Tuberculist Genomic Region

320634 oculocerebrorenal syndrome of Lowe

Details for RP23-455F14.2 - oculocerebrorenal syndrome of Lowe

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320634

Tuberculist Genomic Region

327942 phosphatidylinositol glycan anchor biosynthesis, class L

Details for RP23-234K24.2 - phosphatidylinositol glycan anchor biosynthesis, class L

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327942

Tuberculist Genomic Region

328833 triggering receptor expressed on myeloid cells-like 2

Details for - - triggering receptor expressed on myeloid cells-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328833

Tuberculist Genomic Region

329693 Fc receptor-like 5

Details for - - Fc receptor-like 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329693

Tuberculist Genomic Region

544817 Rho GTPase activating protein 27

Details for RP23-341C5.7 - Rho GTPase activating protein 27

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 544817

Tuberculist Genomic Region

56312 nuclear protein transcription regulator 1

Details for - - nuclear protein transcription regulator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56312

Tuberculist Genomic Region

71772 phospholipase B domain containing 2

Details for - - phospholipase B domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71772

Tuberculist Genomic Region

76916 translocase of inner mitochondrial membrane domain containing 1

Details for - - translocase of inner mitochondrial membrane domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76916

Tuberculist Genomic Region

12140 fatty acid binding protein 7, brain

Details for - - fatty acid binding protein 7, brain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12140

Tuberculist Genomic Region

13136 CD55 antigen

Details for AC111067.1 - CD55 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13136

Tuberculist Genomic Region

15040 histocompatibility 2, T region locus 23

Details for - - histocompatibility 2, T region locus 23

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15040

Tuberculist Genomic Region

16068 interleukin 18 binding protein

Details for - - interleukin 18 binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16068

Tuberculist Genomic Region

52466 solute carrier family 46, member 1

Details for RP23-399H5.1 - solute carrier family 46, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52466

Tuberculist Genomic Region

54616 exostoses (multiple)-like 3

Details for - - exostoses (multiple)-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54616

Tuberculist Genomic Region

69156 catechol-O-methyltransferase domain containing 1

Details for - - catechol-O-methyltransferase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69156

Tuberculist Genomic Region

12266 complement component 3

Details for - - complement component 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12266

Tuberculist Genomic Region

20592 lysine (K)-specific demethylase 5D

Details for - - lysine (K)-specific demethylase 5D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20592

Tuberculist Genomic Region

223453 death-associated protein

Details for - - death-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223453

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000012 CTTCCTKTCTYT SPI1_MA0080.2, SPI1_MA0080.1, FEV_MA0156.1, SPIB_MA0081.1, Klf4_MA0039.1, V$SPI1_04_M02278, V$ELF1_Q5_M01266, V$SPI1_Q5_M02031, V$GABPA_Q4_M01660, V$PU1_Q6_M00658, V$CETS1_Q6_M01870, V$ETS_Q6_M00971, V$ETS2_Q6_M01207, V$PU1_Q4_M01172, V$SPIB_01_M01204 0.0024 TTTTKTKTCTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.72 CGTCGC NA 0.91 GACTCGGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.57 CGCCTA NA NA 0.61 TCGCCTAC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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