PITA_63 megaCluster: 11 Residual: 0.16 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_63	11	0.16	15	0	0.955221	0

Members

Displaying 1 - 34 of 34

100043772 zinc finger protein 850 Details for mCG_23673 - zinc finger protein 850 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100043772 Tuberculist Genomic Region	100233175 cDNA sequence AK010878 Details for - - cDNA sequence AK010878 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100233175 Tuberculist Genomic Region
101513 MOB kinase activator 2 Details for - - MOB kinase activator 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 101513 Tuberculist Genomic Region	110391 quinoid dihydropteridine reductase Details for - - quinoid dihydropteridine reductase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110391 Tuberculist Genomic Region
20014 ribophorin II Details for RP23-163J20.6 - ribophorin II GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20014 Tuberculist Genomic Region	225995 RIKEN cDNA D030056L22 gene Details for - - RIKEN cDNA D030056L22 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 225995 Tuberculist Genomic Region
22643 zinc finger protein 101 Details for - - zinc finger protein 101 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22643 Tuberculist Genomic Region	432940 family with sequence similarity 105, member B Details for - - family with sequence similarity 105, member B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 432940 Tuberculist Genomic Region
53861 zinc finger, RAN-binding domain containing 2 Details for - - zinc finger, RAN-binding domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53861 Tuberculist Genomic Region	53975 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53975 Tuberculist Genomic Region
56040 ribosomal protein, large, P1 Details for - - ribosomal protein, large, P1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56040 Tuberculist Genomic Region	65103 ADP-ribosylation factor-like 6 interacting protein 6 Details for RP23-265N10.1 - ADP-ribosylation factor-like 6 interacting protein 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 65103 Tuberculist Genomic Region
66162 bolA-like 2 (E. coli) Details for - - bolA-like 2 (E. coli) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66162 Tuberculist Genomic Region	66447 microsomal glutathione S-transferase 3 Details for - - microsomal glutathione S-transferase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66447 Tuberculist Genomic Region
67139 MIS12 homolog (yeast) Details for DN-393H17.5 - MIS12 homolog (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67139 Tuberculist Genomic Region	67959 poly-U binding splicing factor 60 Details for - - poly-U binding splicing factor 60 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67959 Tuberculist Genomic Region
70257 RIKEN cDNA 2010107E04 gene Details for - - RIKEN cDNA 2010107E04 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70257 Tuberculist Genomic Region	78372 small nuclear ribonucleoprotein 25 (U11/U12) Details for RP23-177M10.3 - small nuclear ribonucleoprotein 25 (U11/U12) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78372 Tuberculist Genomic Region
18020 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein Details for - - nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18020 Tuberculist Genomic Region	28106 DNA segment, Chr 17, Wayne State University 104, expressed Details for - - DNA segment, Chr 17, Wayne State University 104, expressed GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 28106 Tuberculist Genomic Region
30045 DnaJ (Hsp40) homolog, subfamily C, member 12 Details for - - DnaJ (Hsp40) homolog, subfamily C, member 12 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 30045 Tuberculist Genomic Region	52715 coiled-coil domain containing 43 Details for RP23-57F11.7 - coiled-coil domain containing 43 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52715 Tuberculist Genomic Region
66126 elongation factor 1 homolog (ELF1, S. cerevisiae) Details for - - elongation factor 1 homolog (ELF1, S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66126 Tuberculist Genomic Region	15468 protein arginine N-methyltransferase 2 Details for - - protein arginine N-methyltransferase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15468 Tuberculist Genomic Region
15473 heat-responsive protein 12 Details for - - heat-responsive protein 12 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15473 Tuberculist Genomic Region	217558 G2/M-phase specific E3 ubiquitin ligase Details for - - G2/M-phase specific E3 ubiquitin ligase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217558 Tuberculist Genomic Region
231123 HAUS augmin-like complex, subunit 3 Details for - - HAUS augmin-like complex, subunit 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231123 Tuberculist Genomic Region	69957 CDC16 cell division cycle 16 Details for - - CDC16 cell division cycle 16 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69957 Tuberculist Genomic Region
83409 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 Details for - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 83409 Tuberculist Genomic Region	107995 cell division cycle 20 Details for RP23-145E1.5 - cell division cycle 20 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107995 Tuberculist Genomic Region
11532 alcohol dehydrogenase 5 (class III), chi polypeptide Details for - - alcohol dehydrogenase 5 (class III), chi polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11532 Tuberculist Genomic Region	14227 FK506 binding protein 2 Details for - - FK506 binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14227 Tuberculist Genomic Region
67151 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67151 Tuberculist Genomic Region	20833 structure specific recognition protein 1 Details for RP23-232L15.5 - structure specific recognition protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20833 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_GADP_01_M01258	0.617647	0.000000862

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
180	GCGCNTGCGCAG	V$ZFP206_01_M01742, V$NRF1_Q6_M00652, NRF1_NRF_full_dimeric_12_1	26000	GGGGTGGGGGGG	SP1_MA0079.2, Klf4_MA0039.2, V$SP1_02_M01303, V$ZFP281_04_M02831, V$SP4_Q5_M01273, V$SP1_Q6_01_M00931, V$MAZ_Q6_01_M02023, V$ZFP740_03_M02834, V$SP1_Q2_01_M00933, V$ZFP281_01_M01597, V$UF1H3BETA_Q6_M01068, V$ZNF219_01_M01122, V$KROX_Q6_M00982, V$SP1_03_M02281, V$SP1_Q4_01_M00932, V$SP1_Q6_M00196, V$MAZ_Q6_M00649, V$CKROX_Q2_M01175, V$GC_01_M00255, V$MAZR_01_M00491, V$PAX4_03_M00378, V$EGR2_Q6_M02092, V$EKLF_Q5_M01874, V$WT1_Q6_01_M02036, V$GKLF_02_M01588, V$CACD_01_M01113, V$MOVOB_01_M01104, V$SP1SP3_Q4_M01219, V$ZFP410_04_M02936, V$EGR_Q6_M00807, V$BCL6B_04_M02844, V$KLF7_03_M02773, V$FKLF_Q5_M01837, V$CACBINDINGPROTEIN_Q6_M00720, V$MUSCLE_INI_B_M00321, V$KID3_01_M01160, V$EGR1_Q6_M01873, V$IK_Q5_M01169, V$ZBP89_Q4_M01816, V$SMAD4_04_M02898, V$KLF15_Q2_M01714, V$SP1_01_M00008, Zfp281.2, Zfp740.1, Zfp410.1, Klf7.1, Bcl6b.2, Smad3.1, Ascl2.2, Egr1.1, Zif268.1, Sp4.1, ZNF740_C2H2_full_monomeric_10_1, Zfp740_C2H2_DBD_monomeric_10_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.54	CGTCCG	MIZF_MA0131.1	1.53	CGCGTNCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.54	GGTCACGC	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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