PITA_83 megaCluster: 8 Residual: 0.24

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_83	8	0.24	9	0	0.795809	0.006

Members

Displaying 1 - 39 of 39

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.000019	TTTTTCCTTTCT	NA	3.2	GCCCCGCCCCC	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP1_Q6_M00196, V$SP4_Q5_M01273, V$SP1_Q6_01_M00931, V$SP1_Q4_01_M00932, V$SP1_Q2_01_M00933, V$GC_01_M00255, V$SP1_03_M02281, V$KLF7_03_M02773, V$SP1_02_M01303, V$ZFP281_01_M01597, V$GKLF_02_M01588, V$UF1H3BETA_Q6_M01068, V$SP4_03_M02810, V$SP2_01_M01783, V$MAZR_01_M00491, V$CKROX_Q2_M01175, V$E2F3_Q6_M02089, V$KROX_Q6_M00982, V$ZBP89_Q4_M01816, V$EGR1_Q6_M01873, V$SMAD4_04_M02898, V$SP1SP3_Q4_M01219, V$SP1_01_M00008, V$EGR1_06_M02744, V$ZNF219_01_M01122, V$MAZ_Q6_M00649, V$MAZ_Q6_01_M02023, V$ZFP281_04_M02831, V$CACBINDINGPROTEIN_Q6_M00720, V$CACD_01_M01113, V$WT1_Q6_01_M02036, V$BCL6B_04_M02844, V$ZFP740_03_M02834, V$ETF_Q6_M00695, V$EGR_Q6_M00807, V$E2F_Q2_M00803, V$EKLF_Q5_M01874, V$ZFP410_04_M02936, V$SP4_04_M02914, V$RNF96_01_M01199, V$FKLF_Q5_M01837, Klf7.1, Sp4.1, Smad3.1, Egr1.1, Zfp281.2, Bcl6b.2, Zfp740.1, Zfp410.1, Sp4.2, Zif268.1, Ascl2.2, SP4_C2H2_full_monomeric_17_1, KLF16_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, SP1_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, KLF13_C2H2_full_monomeric_18_1, ZNF740_C2H2_full_monomeric_10_1, Klf12_C2H2_DBD_monomeric_15_1, Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.27	CGCGTC	NA	1.31	TGCGGCCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.45	GGTAAG	NA	NA	0.6	GGTTAGTG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

14790 gene rich cluster, C10 gene Details for - - gene rich cluster, C10 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14790 Tuberculist Genomic Region	22594 X-ray repair complementing defective repair in Chinese hamster cells 1 Details for - - X-ray repair complementing defective repair in Chinese hamster cells 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22594 Tuberculist Genomic Region
227099 postmeiotic segregation increased 1 (S. cerevisiae) Details for - - postmeiotic segregation increased 1 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227099 Tuberculist Genomic Region	26451 ribosomal protein L27A Details for - - ribosomal protein L27A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26451 Tuberculist Genomic Region
27267 cysteinyl-tRNA synthetase Details for - - cysteinyl-tRNA synthetase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27267 Tuberculist Genomic Region	320271 suppressor of cancer cell invasion Details for RP23-322M5.1 - suppressor of cancer cell invasion GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320271 Tuberculist Genomic Region
381802 tRNA splicing endonuclease 2 homolog (S. cerevisiae) Details for - - tRNA splicing endonuclease 2 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381802 Tuberculist Genomic Region	387217 microRNA 23b Details for - - microRNA 23b GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 387217 Tuberculist Genomic Region
54601 forkhead box O4 Details for RP23-356J7.2 - forkhead box O4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54601 Tuberculist Genomic Region	56298 atlastin GTPase 2 Details for - - atlastin GTPase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56298 Tuberculist Genomic Region
67397 endoplasmic reticulum protein 29 Details for - - endoplasmic reticulum protein 29 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67397 Tuberculist Genomic Region	68477 required for meiotic nuclear division 5 homolog A (S. cerevisiae) Details for - - required for meiotic nuclear division 5 homolog A (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68477 Tuberculist Genomic Region
68646 NAD kinase 2, mitochondrial Details for - - NAD kinase 2, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68646 Tuberculist Genomic Region	68927 pentatricopeptide repeat domain 2 Details for - - pentatricopeptide repeat domain 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68927 Tuberculist Genomic Region
69221 RIKEN cDNA 2410006H16 gene Details for - - RIKEN cDNA 2410006H16 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69221 Tuberculist Genomic Region	71375 forkhead box N3 Details for - - forkhead box N3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71375 Tuberculist Genomic Region
75416 NOP14 nucleolar protein Details for - - NOP14 nucleolar protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75416 Tuberculist Genomic Region	103711 pyridoxine 5'-phosphate oxidase Details for RP23-353J21.11-001 - pyridoxine 5'-phosphate oxidase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 103711 Tuberculist Genomic Region
106205 zinc finger CCCH type containing 7 A Details for - - zinc finger CCCH type containing 7 A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106205 Tuberculist Genomic Region	218138 GDP-mannose 4, 6-dehydratase Details for RP23-459H16.3 - GDP-mannose 4, 6-dehydratase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218138 Tuberculist Genomic Region
22156 tuftelin 1 Details for - - tuftelin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22156 Tuberculist Genomic Region	236920 START domain containing 8 Details for RP23-73M10.1 - START domain containing 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 236920 Tuberculist Genomic Region
244556 zinc finger protein 791 Details for - - zinc finger protein 791 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 244556 Tuberculist Genomic Region	269639 zinc finger protein 512 Details for - - zinc finger protein 512 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269639 Tuberculist Genomic Region
321007 serine active site containing 1 Details for - - serine active site containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 321007 Tuberculist Genomic Region	63985 glia maturation factor, beta Details for - - glia maturation factor, beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 63985 Tuberculist Genomic Region
67326 RIKEN cDNA 1700037H04 gene Details for RP23-32L15.2 - RIKEN cDNA 1700037H04 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67326 Tuberculist Genomic Region	75739 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) Details for - - membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75739 Tuberculist Genomic Region
76123 G-protein signalling modulator 2 (AGS3-like, C. elegans) Details for RP23-217I18.2 - G-protein signalling modulator 2 (AGS3-like, C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76123 Tuberculist Genomic Region	103268 centrosomal protein 57-like 1 Details for - - centrosomal protein 57-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 103268 Tuberculist Genomic Region
107029 malic enzyme 2, NAD(+)-dependent, mitochondrial Details for - - malic enzyme 2, NAD(+)-dependent, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107029 Tuberculist Genomic Region	11545 poly (ADP-ribose) polymerase family, member 1 Details for - - poly (ADP-ribose) polymerase family, member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11545 Tuberculist Genomic Region
11907 arginyltransferase 1 Details for - - arginyltransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11907 Tuberculist Genomic Region	17535 meiotic recombination 11 homolog A (S. cerevisiae) Details for RP23-149D5.3 - meiotic recombination 11 homolog A (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17535 Tuberculist Genomic Region
213068 transmembrane protein 71 Details for - - transmembrane protein 71 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 213068 Tuberculist Genomic Region	246102 rotatin Details for - - rotatin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 246102 Tuberculist Genomic Region
72519 transmembrane protein 55A Details for RP23-379L17.2 - transmembrane protein 55A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72519 Tuberculist Genomic Region	76044 non-SMC condensin II complex, subunit G2 Details for - - non-SMC condensin II complex, subunit G2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76044 Tuberculist Genomic Region
235339 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) Details for - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 235339 Tuberculist Genomic Region

Summary

Members

Details for - - gene rich cluster, C10 gene

Details for - - X-ray repair complementing defective repair in Chinese hamster cells 1

Details for - - postmeiotic segregation increased 1 (S. cerevisiae)

Details for - - ribosomal protein L27A

Details for - - cysteinyl-tRNA synthetase

Details for RP23-322M5.1 - suppressor of cancer cell invasion

Details for - - tRNA splicing endonuclease 2 homolog (S. cerevisiae)

Details for - - microRNA 23b

Details for RP23-356J7.2 - forkhead box O4

Details for - - atlastin GTPase 2

Details for - - endoplasmic reticulum protein 29

Details for - - required for meiotic nuclear division 5 homolog A (S. cerevisiae)

Details for - - NAD kinase 2, mitochondrial

Details for - - pentatricopeptide repeat domain 2

Details for - - RIKEN cDNA 2410006H16 gene

Details for - - forkhead box N3

Details for - - NOP14 nucleolar protein

Details for RP23-353J21.11-001 - pyridoxine 5'-phosphate oxidase

Details for - - zinc finger CCCH type containing 7 A

Details for RP23-459H16.3 - GDP-mannose 4, 6-dehydratase

Details for - - tuftelin 1

Details for RP23-73M10.1 - START domain containing 8

Details for - - zinc finger protein 791

Details for - - zinc finger protein 512

Details for - - serine active site containing 1

Details for - - glia maturation factor, beta

Details for RP23-32L15.2 - RIKEN cDNA 1700037H04 gene

Details for - - membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)

Details for RP23-217I18.2 - G-protein signalling modulator 2 (AGS3-like, C. elegans)

Details for - - centrosomal protein 57-like 1

Details for - - malic enzyme 2, NAD(+)-dependent, mitochondrial

Details for - - poly (ADP-ribose) polymerase family, member 1

Details for - - arginyltransferase 1

Details for RP23-149D5.3 - meiotic recombination 11 homolog A (S. cerevisiae)

Details for - - transmembrane protein 71

Details for - - rotatin

Details for RP23-379L17.2 - transmembrane protein 55A

Details for - - non-SMC condensin II complex, subunit G2

Details for - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)

GO Terms

3p UTR PITA