PITA_84 megaCluster: 11 Residual: 0.27

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_84 11 0.27 9 0 0.718 0.426
Displaying 1 - 50 of 50
100503386 predicted gene 4980

Details for - - predicted gene 4980

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503386

Tuberculist Genomic Region

101739 PC4 and SFRS1 interacting protein 1

Details for RP23-311B24.4 - PC4 and SFRS1 interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101739

Tuberculist Genomic Region

11632 aryl-hydrocarbon receptor-interacting protein

Details for - - aryl-hydrocarbon receptor-interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11632

Tuberculist Genomic Region

13618 endothelin receptor type B

Details for - - endothelin receptor type B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13618

Tuberculist Genomic Region

16010 insulin-like growth factor binding protein 4

Details for RP23-333D2.6 - insulin-like growth factor binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16010

Tuberculist Genomic Region

17122 Max dimerization protein 4

Details for - - Max dimerization protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17122

Tuberculist Genomic Region

17308 mannoside acetylglucosaminyltransferase 1

Details for RP23-10M12.1 - mannoside acetylglucosaminyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17308

Tuberculist Genomic Region

18242 ornithine aminotransferase

Details for - - ornithine aminotransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18242

Tuberculist Genomic Region

19650 retinoblastoma-like 1 (p107)

Details for - - retinoblastoma-like 1 (p107)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19650

Tuberculist Genomic Region

20971 syndecan 4

Details for RP23-462O16.6 - syndecan 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20971

Tuberculist Genomic Region

226422 RAB7, member RAS oncogene family-like 1

Details for - - RAB7, member RAS oncogene family-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226422

Tuberculist Genomic Region

24014 ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)

Details for - - ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24014

Tuberculist Genomic Region

381038 presenilin associated, rhomboid-like

Details for - - presenilin associated, rhomboid-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381038

Tuberculist Genomic Region

52502 calcium regulated heat stable protein 1

Details for - - calcium regulated heat stable protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52502

Tuberculist Genomic Region

56786 TMEM9 domain family, member B

Details for - - TMEM9 domain family, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56786

Tuberculist Genomic Region

58911 sulfatase modifying factor 1

Details for - - sulfatase modifying factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58911

Tuberculist Genomic Region

60364 downstream neighbor of SON

Details for - - downstream neighbor of SON

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60364

Tuberculist Genomic Region

67037 polyamine-modulated factor 1

Details for - - polyamine-modulated factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67037

Tuberculist Genomic Region

69270 GINS complex subunit 1 (Psf1 homolog)

Details for RP23-193L22.1 - GINS complex subunit 1 (Psf1 homolog)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69270

Tuberculist Genomic Region

12972 aldehyde dehydrogenase 1 family, member L1

Details for - - aldehyde dehydrogenase 1 family, member L1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107747

Tuberculist Genomic Region

17988 crystallin, zeta

Details for - - crystallin, zeta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12972

Tuberculist Genomic Region

18669 N-myc downstream regulated gene 1

Details for - - N-myc downstream regulated gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17988

Tuberculist Genomic Region

20887 ATP-binding cassette, sub-family B (MDR/TAP), member 1B

Details for - - ATP-binding cassette, sub-family B (MDR/TAP), member 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18669

Tuberculist Genomic Region

224132 sulfotransferase family 1A, phenol-preferring, member 1

Details for - - sulfotransferase family 1A, phenol-preferring, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20887

Tuberculist Genomic Region

70998 disrupted in renal carcinoma 2 (human)

Details for - - disrupted in renal carcinoma 2 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224132

Tuberculist Genomic Region

71769 PHD finger protein 6

Details for - - PHD finger protein 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70998

Tuberculist Genomic Region

72201 Bardet-Biedl syndrome 10 (human)

Details for - - Bardet-Biedl syndrome 10 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71769

Tuberculist Genomic Region

74091 OTU domain containing 6B

Details for RP23-379L17.1 - OTU domain containing 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72201

Tuberculist Genomic Region

108671 N-acetylneuraminate pyruvate lyase

Details for - - N-acetylneuraminate pyruvate lyase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74091

Tuberculist Genomic Region

109900 DnaJ (Hsp40) homolog, subfamily C, member 9

Details for - - DnaJ (Hsp40) homolog, subfamily C, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108671

Tuberculist Genomic Region

13194 argininosuccinate lyase

Details for - - argininosuccinate lyase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109900

Tuberculist Genomic Region

14211 damage specific DNA binding protein 1

Details for - - damage specific DNA binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13194

Tuberculist Genomic Region

20133 structural maintenance of chromosomes 2

Details for RP23-122I3.3 - structural maintenance of chromosomes 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14211

Tuberculist Genomic Region

381306 ribonucleotide reductase M1

Details for - - ribonucleotide reductase M1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20133

Tuberculist Genomic Region

56150 cDNA sequence BC055324

Details for - - cDNA sequence BC055324

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381306

Tuberculist Genomic Region

66868 MAD2 mitotic arrest deficient-like 1

Details for - - MAD2 mitotic arrest deficient-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56150

Tuberculist Genomic Region

67201 major facilitator superfamily domain containing 1

Details for - - major facilitator superfamily domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66868

Tuberculist Genomic Region

109778 glyoxalase domain containing 4

Details for RP23-147P4.6 - glyoxalase domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67201

Tuberculist Genomic Region

13605 biliverdin reductase A

Details for RP23-26A12.2 - biliverdin reductase A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109778

Tuberculist Genomic Region

20135 ect2 oncogene

Details for - - ect2 oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13605

Tuberculist Genomic Region

231123 ribonucleotide reductase M2

Details for - - ribonucleotide reductase M2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20135

Tuberculist Genomic Region

231506 HAUS augmin-like complex, subunit 3

Details for - - HAUS augmin-like complex, subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231123

Tuberculist Genomic Region

381280 lin-54 homolog (C. elegans)

Details for - - lin-54 homolog (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231506

Tuberculist Genomic Region

66455 Holliday junction recognition protein

Details for - - Holliday junction recognition protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381280

Tuberculist Genomic Region

76687 canopy 4 homolog (zebrafish)

Details for - - canopy 4 homolog (zebrafish)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66455

Tuberculist Genomic Region

20877 signal peptidase complex subunit 3 homolog (S. cerevisiae)

Details for - - signal peptidase complex subunit 3 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76687

Tuberculist Genomic Region

226646 aurora kinase B

Details for RP23-19I2.1 - aurora kinase B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20877

Tuberculist Genomic Region

227620 NADH dehydrogenase (ubiquinone) Fe-S protein 2

Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226646

Tuberculist Genomic Region

327762 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1

Details for RP23-47P18.3 - UDP-N-acteylglucosamine pyrophosphorylase 1-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227620

Tuberculist Genomic Region

Details for - - DNA replication helicase 2 homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327762

Tuberculist Genomic Region

TFs percTargets pValue
SOX8_HMG_DBD_dimeric_14_1 0.16 0.0000521
Displaying 1 - 1 of 1
GO Terms
NA
Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.15 GCGCGA V$ZFP161_04_M02933, V$E2F_03_M00516, V$E2F4DP1_01_M00738, V$E2F1_Q3_01_M00938, V$E2F_Q6_01_M00920, V$E2F_01_M00024, V$E2F2_03_M02742, Zfp161.2, E2F2.1, E2F3.1, Zfp161.1 1.12 CGCGNCCG NA
Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.45 CGTGCG NA NA 0.39 NGTGNGTG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA
miRNAs percTargets pValue
NA
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