PITA_9 megaCluster: 4 Residual: 0.19

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_9 4 0.19 9 0 0.76212 0.029
Displaying 1 - 47 of 47
100041859 ribosomal protein L29 pseudogene

Details for - - ribosomal protein L29 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100041859

Tuberculist Genomic Region

100125262 T cell receptor beta, constant region 1

Details for - - T cell receptor beta, constant region 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100125262

Tuberculist Genomic Region

105675 peptidylprolyl isomerase F (cyclophilin F)

Details for - - peptidylprolyl isomerase F (cyclophilin F)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105675

Tuberculist Genomic Region

14182 fibroblast growth factor receptor 1

Details for - - fibroblast growth factor receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14182

Tuberculist Genomic Region

17127 SMAD family member 3

Details for RP23-63E8.1 - SMAD family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17127

Tuberculist Genomic Region

17395 matrix metallopeptidase 9

Details for RP23-61O3.10-001 - matrix metallopeptidase 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17395

Tuberculist Genomic Region

17999 neural precursor cell expressed, developmentally down-regulated 4

Details for - - neural precursor cell expressed, developmentally down-regulated 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17999

Tuberculist Genomic Region

18442 purinergic receptor P2Y, G-protein coupled 2

Details for - - purinergic receptor P2Y, G-protein coupled 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18442

Tuberculist Genomic Region

18689 per-hexamer repeat gene 4

Details for - - per-hexamer repeat gene 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18689

Tuberculist Genomic Region

18987 POU domain, class 2, transcription factor 2

Details for - - POU domain, class 2, transcription factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18987

Tuberculist Genomic Region

19248 protein tyrosine phosphatase, non-receptor type 12

Details for - - protein tyrosine phosphatase, non-receptor type 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19248

Tuberculist Genomic Region

20602 nuclear receptor co-repressor 2

Details for - - nuclear receptor co-repressor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20602

Tuberculist Genomic Region

210925 integrator complex subunit 9

Details for - - integrator complex subunit 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 210925

Tuberculist Genomic Region

218699 PX domain containing serine/threonine kinase

Details for - - PX domain containing serine/threonine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218699

Tuberculist Genomic Region

22224 ubiquitin specific peptidase 10

Details for - - ubiquitin specific peptidase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22224

Tuberculist Genomic Region

225929 protein associated with topoisomerase II homolog 1 (yeast)

Details for - - protein associated with topoisomerase II homolog 1 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225929

Tuberculist Genomic Region

226169 peroxisome proliferative activated receptor, gamma, coactivator-related 1

Details for - - peroxisome proliferative activated receptor, gamma, coactivator-related 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226169

Tuberculist Genomic Region

22770 zinc fingers and homeoboxes 1

Details for - - zinc fingers and homeoboxes 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22770

Tuberculist Genomic Region

230770 transmembrane protein 39b

Details for RP23-151A15.10-002 - transmembrane protein 39b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230770

Tuberculist Genomic Region

24045 secretory carrier membrane protein 3

Details for - - secretory carrier membrane protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24045

Tuberculist Genomic Region

241621 predicted gene 13981

Details for - - predicted gene 13981

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241621

Tuberculist Genomic Region

244418 DNA segment, Chr 8, ERATO Doi 82, expressed

Details for - - DNA segment, Chr 8, ERATO Doi 82, expressed

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244418

Tuberculist Genomic Region

244895 pseudopodium-enriched atypical kinase 1

Details for - - pseudopodium-enriched atypical kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244895

Tuberculist Genomic Region

269999 ORAI calcium release-activated calcium modulator 3

Details for - - ORAI calcium release-activated calcium modulator 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269999

Tuberculist Genomic Region

270118 mastermind like 2 (Drosophila)

Details for - - mastermind like 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 270118

Tuberculist Genomic Region

414077 glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)

Details for - - glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 384281

Tuberculist Genomic Region

52348 cDNA sequence BC056474

Details for - - cDNA sequence BC056474

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 414077

Tuberculist Genomic Region

54342 vacuolar protein sorting 37A (yeast)

Details for - - vacuolar protein sorting 37A (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52348

Tuberculist Genomic Region

54383 glucosamine-phosphate N-acetyltransferase 1

Details for - - glucosamine-phosphate N-acetyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54342

Tuberculist Genomic Region

56274 polyhomeotic-like 2 (Drosophila)

Details for RP23-467J23.1 - polyhomeotic-like 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54383

Tuberculist Genomic Region

58182 serine/threonine kinase 3

Details for - - serine/threonine kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56274

Tuberculist Genomic Region

66196 prokineticin receptor 1

Details for - - prokineticin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58182

Tuberculist Genomic Region

66889 myosin XIX

Details for RP23-391K14.2 - myosin XIX

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66196

Tuberculist Genomic Region

67263 ring finger protein 128

Details for MNCb-3816 - ring finger protein 128

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66889

Tuberculist Genomic Region

69590 zinc finger SWIM-type containing 6

Details for - - zinc finger SWIM-type containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67263

Tuberculist Genomic Region

71844 glutathione peroxidase 8 (putative)

Details for - - glutathione peroxidase 8 (putative)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69590

Tuberculist Genomic Region

74451 nucleoporin like 1

Details for - - nucleoporin like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71844

Tuberculist Genomic Region

74761 phosphatidylglycerophosphate synthase 1

Details for RP23-268N22.7 - phosphatidylglycerophosphate synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74451

Tuberculist Genomic Region

94112 matrix-remodelling associated 8

Details for RP23-242K15.14-001 - matrix-remodelling associated 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74761

Tuberculist Genomic Region

99334 mediator complex subunit 15

Details for - - mediator complex subunit 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94112

Tuberculist Genomic Region

12051 zinc finger SCAN domains 29

Details for RP23-232N20.4 - zinc finger SCAN domains 29

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99334

Tuberculist Genomic Region

18787 B cell leukemia/lymphoma 3

Details for - - B cell leukemia/lymphoma 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12051

Tuberculist Genomic Region

20530 serine (or cysteine) peptidase inhibitor, clade E, member 1

Details for - - serine (or cysteine) peptidase inhibitor, clade E, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18787

Tuberculist Genomic Region

53621 solute carrier family 31, member 2

Details for RP23-64F17.2 - solute carrier family 31, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20530

Tuberculist Genomic Region

54446 CCR4-NOT transcription complex, subunit 4

Details for - - CCR4-NOT transcription complex, subunit 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53621

Tuberculist Genomic Region

75089 nuclear factor of activated T cells 5

Details for - - nuclear factor of activated T cells 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54446

Tuberculist Genomic Region

Details for - - UHRF1 (ICBP90) binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75089

Tuberculist Genomic Region

TFs percTargets pValue
V_EGR_Q6_M00807 0.930233 0.000000176
Displaying 1 - 1 of 1
GO Terms
NA
Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.33 TCGCCG NA 1.42 CCGCCGMA NA
Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.45 CATACG NA NA 0.46 CAACCGTG NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-194 0.648649 0.00000977
miRNAs percTargets pValue
mmu-miR-466n-5p 0.487805 0.00000237
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