PITA_91 megaCluster: 4 Residual: 0.19 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_91	4	0.19	15	0	0.936708	0

Members

Displaying 1 - 32 of 32

109624 lipoma HMGIC fusion partner Details for - - lipoma HMGIC fusion partner GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108927 Tuberculist Genomic Region	11468 caldesmon 1 Details for - - caldesmon 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109624 Tuberculist Genomic Region
12394 actin, gamma 2, smooth muscle, enteric Details for - - actin, gamma 2, smooth muscle, enteric GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11468 Tuberculist Genomic Region	12816 runt related transcription factor 1 Details for - - runt related transcription factor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12394 Tuberculist Genomic Region
17261 collagen, type XII, alpha 1 Details for - - collagen, type XII, alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12816 Tuberculist Genomic Region	17354 myocyte enhancer factor 2D Details for - - myocyte enhancer factor 2D GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17261 Tuberculist Genomic Region
192216 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 Details for RP23-349H7.1 - myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17354 Tuberculist Genomic Region	20222 transmembrane protein 47 Details for RP23-382D17.1 - transmembrane protein 47 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 192216 Tuberculist Genomic Region
212127 splicing factor 3a, subunit 2 Details for - - splicing factor 3a, subunit 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20222 Tuberculist Genomic Region	218952 proline and serine rich 1 Details for - - proline and serine rich 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 212127 Tuberculist Genomic Region
227937 fermitin family homolog 2 (Drosophila) Details for RP23-359O5.1 - fermitin family homolog 2 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218952 Tuberculist Genomic Region	233871 plakophilin 4 Details for RP23-311G5.1 - plakophilin 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227937 Tuberculist Genomic Region
269800 ataxin 2-like Details for - - ataxin 2-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 233871 Tuberculist Genomic Region	29817 zinc finger protein 384 Details for - - zinc finger protein 384 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269800 Tuberculist Genomic Region
54519 insulin-like growth factor binding protein 7 Details for - - insulin-like growth factor binding protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 29817 Tuberculist Genomic Region	54635 amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein Details for RP23-114M13.3 - amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54519 Tuberculist Genomic Region
66569 platelet-derived growth factor, C polypeptide Details for - - platelet-derived growth factor, C polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54635 Tuberculist Genomic Region	68544 glycerophosphodiester phosphodiesterase domain containing 1 Details for RP23-352L3.1 - glycerophosphodiester phosphodiesterase domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66569 Tuberculist Genomic Region
70093 RIKEN cDNA 2310036O22 gene Details for - - RIKEN cDNA 2310036O22 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68544 Tuberculist Genomic Region	74343 ubiquitin-conjugating enzyme E2Q (putative) 1 Details for - - ubiquitin-conjugating enzyme E2Q (putative) 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70093 Tuberculist Genomic Region
105675 CREB regulated transcription coactivator 2 Details for - - CREB regulated transcription coactivator 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74343 Tuberculist Genomic Region	14268 peptidylprolyl isomerase F (cyclophilin F) Details for - - peptidylprolyl isomerase F (cyclophilin F) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105675 Tuberculist Genomic Region
17087 fibronectin 1 Details for - - fibronectin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14268 Tuberculist Genomic Region	20239 lymphocyte antigen 96 Details for - - lymphocyte antigen 96 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17087 Tuberculist Genomic Region
20317 ataxin 2 Details for - - ataxin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20239 Tuberculist Genomic Region	20321 serine (or cysteine) peptidase inhibitor, clade F, member 1 Details for RP23-384C18.1 - serine (or cysteine) peptidase inhibitor, clade F, member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20317 Tuberculist Genomic Region
227331 ferric-chelate reductase 1 Details for - - ferric-chelate reductase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20321 Tuberculist Genomic Region	229542 GRB10 interacting GYF protein 2 Details for - - GRB10 interacting GYF protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227331 Tuberculist Genomic Region
269799 GATA zinc finger domain containing 2B Details for - - GATA zinc finger domain containing 2B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229542 Tuberculist Genomic Region	68728 C-type lectin domain family 4, member a1 Details for - - C-type lectin domain family 4, member a1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269799 Tuberculist Genomic Region
74761 transformation related protein 53 inducible nuclear protein 2 Details for RP23-32O9.1 - transformation related protein 53 inducible nuclear protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68728 Tuberculist Genomic Region	Details for RP23-242K15.14-001 - matrix-remodelling associated 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74761 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ATATA_B_M00311	0.125	0.0000325

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.0000000000049	AAARNAANAANA	NA	0.47	GGGWGGGNGGGG	SP1_MA0079.2, Klf4_MA0039.2, V$MAZ_Q6_01_M02023, V$ZFP281_04_M02831, V$SP1_03_M02281, V$UF1H3BETA_Q6_M01068, V$SP1_Q2_01_M00933, V$ZFP281_01_M01597, V$CKROX_Q2_M01175, V$GKLF_02_M01588, V$SP1_Q4_01_M00932, V$ZNF219_01_M01122, V$SP1_02_M01303, V$SP1_Q6_M00196, V$FKLF_Q5_M01837, V$EGR1_Q6_M01873, V$MAZ_Q6_M00649, V$SP1SP3_Q4_M01219, V$GC_01_M00255, V$KROX_Q6_M00982, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$ZFP740_03_M02834, V$KLF7_03_M02773, V$EGR1_06_M02744, V$ZBP89_Q4_M01816, V$CACBINDINGPROTEIN_Q6_M00720, V$EGR_Q6_M00807, V$BTEB3_Q5_M01865, V$CACD_01_M01113, V$SPZ1_01_M00446, Zfp281.2, Egr1.1, Zfp740.1, Klf7.1, Zif268.1, Ascl2.2, Sox13.2, Smad3.1, Sp4.1, Bcl6b.2, ZNF740_C2H2_full_monomeric_10_1, SP8_C2H2_DBD_monomeric_12_1, KLF16_C2H2_DBD_monomeric_11_1, Zfp740_C2H2_DBD_monomeric_10_1, SP1_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.17	CGNCGGGA	NA		NA	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.53	GACAAT	NA	NA	0.58	GTACTGCC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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