TargetScan_100 megaCluster: 11 Residual: 0.29 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_100	11	0.29	9	0	0.491884	1

Members

Displaying 1 - 28 of 28

100039768 RIKEN cDNA 1700024F20 gene Details for - - RIKEN cDNA 1700024F20 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100039768 Tuberculist Genomic Region	100042332 RIKEN cDNA 2810410L24 gene Details for - - RIKEN cDNA 2810410L24 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100042332 Tuberculist Genomic Region
13618 zinc finger CCCH type containing 7 A Details for - - zinc finger CCCH type containing 7 A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106205 Tuberculist Genomic Region	15384 endothelin receptor type B Details for - - endothelin receptor type B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13618 Tuberculist Genomic Region
16835 heterogeneous nuclear ribonucleoprotein A/B Details for RP23-79E13.1 - heterogeneous nuclear ribonucleoprotein A/B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15384 Tuberculist Genomic Region	17988 low density lipoprotein receptor Details for - - low density lipoprotein receptor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16835 Tuberculist Genomic Region
19650 N-myc downstream regulated gene 1 Details for - - N-myc downstream regulated gene 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17988 Tuberculist Genomic Region	20419 retinoblastoma-like 1 (p107) Details for - - retinoblastoma-like 1 (p107) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19650 Tuberculist Genomic Region
20971 Shc SH2-domain binding protein 1 Details for - - Shc SH2-domain binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20419 Tuberculist Genomic Region	217262 syndecan 4 Details for RP23-462O16.6 - syndecan 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20971 Tuberculist Genomic Region
22036 ATP-binding cassette, sub-family A (ABC1), member 9 Details for RP23-328B4.1 - ATP-binding cassette, sub-family A (ABC1), member 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217262 Tuberculist Genomic Region	22367 TRAF-interacting protein Details for - - TRAF-interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22036 Tuberculist Genomic Region
224088 vaccinia related kinase 1 Details for - - vaccinia related kinase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22367 Tuberculist Genomic Region	226849 ATPase type 13A3 Details for - - ATPase type 13A3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 224088 Tuberculist Genomic Region
236920 protein phosphatase 2, regulatory subunit B', alpha Details for - - protein phosphatase 2, regulatory subunit B', alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226849 Tuberculist Genomic Region	319554 START domain containing 8 Details for RP23-73M10.1 - START domain containing 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 236920 Tuberculist Genomic Region
329506 isopentenyl-diphosphate delta isomerase Details for - - isopentenyl-diphosphate delta isomerase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319554 Tuberculist Genomic Region	387217 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 Details for RP23-34E24.1 - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 329506 Tuberculist Genomic Region
433637 microRNA 23b Details for - - microRNA 23b GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 387217 Tuberculist Genomic Region	67204 predicted gene 5547 Details for - - predicted gene 5547 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 433637 Tuberculist Genomic Region
68738 eukaryotic translation initiation factor 2, subunit 2 (beta) Details for RP23-480H10.3 - eukaryotic translation initiation factor 2, subunit 2 (beta) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67204 Tuberculist Genomic Region	71275 acyl-CoA synthetase short-chain family member 1 Details for RP23-156P22.4 - acyl-CoA synthetase short-chain family member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68738 Tuberculist Genomic Region
75739 NADP+ dependent oxidoreductase domain containing 1 Details for - - NADP+ dependent oxidoreductase domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71275 Tuberculist Genomic Region	76123 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) Details for - - membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75739 Tuberculist Genomic Region
100039740 G-protein signalling modulator 2 (AGS3-like, C. elegans) Details for RP23-217I18.2 - G-protein signalling modulator 2 (AGS3-like, C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76123 Tuberculist Genomic Region	22235 ribosomal protein S18 pseudogene Details for - - ribosomal protein S18 pseudogene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100039740 Tuberculist Genomic Region
226594 UDP-glucose dehydrogenase Details for - - UDP-glucose dehydrogenase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22235 Tuberculist Genomic Region	Details for - - RCSD domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226594 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_IRF1_01_M00062	0.347826	0.0000215

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
3700	CCCCGCCCCCN	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP1_Q6_M00196, V$SP1_03_M02281, V$ZFP281_01_M01597, V$SP1_Q2_01_M00933, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$SP1_Q6_01_M00931, V$GC_01_M00255, V$SP1_02_M01303, V$KLF7_03_M02773, V$ZFP281_04_M02831, V$UF1H3BETA_Q6_M01068, V$SP4_03_M02810, V$MAZR_01_M00491, V$SP1SP3_Q4_M01219, V$GKLF_02_M01588, V$KROX_Q6_M00982, V$CKROX_Q2_M01175, V$EGR1_Q6_M01873, V$ZBP89_Q4_M01816, V$ZNF219_01_M01122, V$SP1_01_M00008, V$SMAD4_04_M02898, V$SP2_01_M01783, V$EGR1_06_M02744, V$E2F3_Q6_M02089, V$MAZ_Q6_01_M02023, V$ETF_Q6_M00695, V$MAZ_Q6_M00649, V$WT1_Q6_01_M02036, V$RNF96_01_M01199, V$BCL6B_04_M02844, V$CACD_01_M01113, V$ZFP410_04_M02936, V$ZFP740_03_M02834, V$CACBINDINGPROTEIN_Q6_M00720, V$EKLF_Q5_M01874, V$KLF15_Q2_M01714, V$WT1_Q6_M01118, Klf7.1, Zfp281.2, Sp4.1, Egr1.1, Smad3.1, Bcl6b.2, Zfp410.1, Zfp740.1, Zif268.1, Ascl2.2, Sp4.2, SP4_C2H2_full_monomeric_17_1, KLF16_C2H2_DBD_monomeric_11_1, SP1_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, SP3_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, ZNF740_C2H2_full_monomeric_10_1, Klf12_C2H2_DBD_monomeric_15_1, Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1, KLF13_C2H2_full_monomeric_18_1	35000	AGGAANYYGARG	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.42	CGCGTT	NA	1.6	CGCGTTCT	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.66	ATNGTT	NA	NA	0.75	TGCTTGAT	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-1912	0.666667	0.0000227

Add comment

Log in or register to post comments