TargetScan_103 megaCluster: 11 Residual: 0.23 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_103	11	0.23	15	0	0.891081	0

Members

Displaying 1 - 33 of 33

100503386 predicted gene 4980 Details for - - predicted gene 4980 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503386 Tuberculist Genomic Region	110006 glucuronidase, beta Details for - - glucuronidase, beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110006 Tuberculist Genomic Region
11949 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 Details for RP23-119N4.1 - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11949 Tuberculist Genomic Region	12972 crystallin, zeta Details for - - crystallin, zeta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12972 Tuberculist Genomic Region
140500 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 Details for RP23-242K15.11-002 - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 140500 Tuberculist Genomic Region	18020 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein Details for - - nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18020 Tuberculist Genomic Region
211986 transmembrane protein 18 Details for - - transmembrane protein 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 211986 Tuberculist Genomic Region	214901 CTF18, chromosome transmission fidelity factor 18 Details for - - CTF18, chromosome transmission fidelity factor 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 214901 Tuberculist Genomic Region
227753 gelsolin Details for RP23-186B18.2 - gelsolin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227753 Tuberculist Genomic Region	246707 elastin microfibril interfacer 2 Details for - - elastin microfibril interfacer 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 246707 Tuberculist Genomic Region
432940 family with sequence similarity 105, member B Details for - - family with sequence similarity 105, member B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 432940 Tuberculist Genomic Region	56794 2-hydroxyacyl-CoA lyase 1 Details for - - 2-hydroxyacyl-CoA lyase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56794 Tuberculist Genomic Region
66126 elongation factor 1 homolog (ELF1, S. cerevisiae) Details for - - elongation factor 1 homolog (ELF1, S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66126 Tuberculist Genomic Region	66818 small integral membrane protein 7 Details for - - small integral membrane protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66818 Tuberculist Genomic Region
66868 major facilitator superfamily domain containing 1 Details for - - major facilitator superfamily domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66868 Tuberculist Genomic Region	67515 tetratricopeptide repeat domain 33 Details for - - tetratricopeptide repeat domain 33 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67515 Tuberculist Genomic Region
68911 pygopus 2 Details for - - pygopus 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68911 Tuberculist Genomic Region	70551 transmembrane and tetratricopeptide repeat containing 4 Details for - - transmembrane and tetratricopeptide repeat containing 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70551 Tuberculist Genomic Region
71924 epsilon-tubulin 1 Details for - - epsilon-tubulin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71924 Tuberculist Genomic Region	72201 OTU domain containing 6B Details for RP23-379L17.1 - OTU domain containing 6B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72201 Tuberculist Genomic Region
74626 transmembrane protein 81 Details for - - transmembrane protein 81 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74626 Tuberculist Genomic Region	76687 signal peptidase complex subunit 3 homolog (S. cerevisiae) Details for - - signal peptidase complex subunit 3 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76687 Tuberculist Genomic Region
100503331 high mobility group nucleosomal binding domain 2 pseudogene Details for - - high mobility group nucleosomal binding domain 2 pseudogene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503331 Tuberculist Genomic Region	16548 fatty acid synthase Details for RP23-99M13.6 - fatty acid synthase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14104 Tuberculist Genomic Region
239839 ketohexokinase Details for - - ketohexokinase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16548 Tuberculist Genomic Region	54638 coiled-coil domain containing 14 Details for - - coiled-coil domain containing 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 239839 Tuberculist Genomic Region
13631 coiled-coil domain containing 22 Details for - - coiled-coil domain containing 22 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54638 Tuberculist Genomic Region	231506 eukaryotic elongation factor-2 kinase Details for - - eukaryotic elongation factor-2 kinase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13631 Tuberculist Genomic Region
66455 lin-54 homolog (C. elegans) Details for - - lin-54 homolog (C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231506 Tuberculist Genomic Region	14211 canopy 4 homolog (zebrafish) Details for - - canopy 4 homolog (zebrafish) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66455 Tuberculist Genomic Region
226646 structural maintenance of chromosomes 2 Details for RP23-122I3.3 - structural maintenance of chromosomes 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14211 Tuberculist Genomic Region	381306 NADH dehydrogenase (ubiquinone) Fe-S protein 2 Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226646 Tuberculist Genomic Region
Details for - - cDNA sequence BC055324 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381306 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.13	TTTNTTTAMAAT	NA	600	AGGGGKCGGRGC	SP1_MA0079.2, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$SP1_Q6_01_M00931, V$GC_01_M00255, V$SP4_03_M02810, V$EGR1_Q6_M01873, V$SP1_Q2_01_M00933, V$SP4_Q5_M01273, V$SP1_03_M02281, V$EGR1_06_M02744, V$KROX_Q6_M00982, V$UF1H3BETA_Q6_M01068, V$ZFP281_01_M01597, Sp4.1, Egr1.1, Klf7.1, Esrra.2, Zfp410.1, Bcl6b.2, Zfp281.2, SP4_C2H2_full_monomeric_17_1, KLF16_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1, SP8_C2H2_DBD_monomeric_12_1, SP1_C2H2_DBD_monomeric_11_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.09	TCGCGC	V$E2F_03_M00516, V$ZFP161_04_M02933, V$E2F_01_M00024, V$E2F_Q6_01_M00920, V$E2F1_Q3_01_M00938, V$E2F_02_M00050, V$E2F4DP1_01_M00738, V$E2F1DP1RB_01_M00740, V$E2F1_Q6_01_M00940, V$E2F2_03_M02742, V$E2F_Q3_M00425, V$E2F4_Q6_M02090, V$E2F_Q4_01_M00919, V$ZF5_01_M00716, Zfp161.2, E2F2.1, E2F3.1, Zfp161.1	1.23	TCGCGCCG	V$E2F_Q2_M00803

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.62	GCCTGCTN	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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