TargetScan_167 megaCluster: 11 Residual: 0.16 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_167	11	0.16	15	0	0.950881	0

Members

Displaying 1 - 29 of 29

11416 solute carrier family 33 (acetyl-CoA transporter), member 1 Details for - - solute carrier family 33 (acetyl-CoA transporter), member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11416 Tuberculist Genomic Region	14155 feminization 1 homolog b (C. elegans) Details for - - feminization 1 homolog b (C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14155 Tuberculist Genomic Region
20916 succinate-Coenzyme A ligase, ADP-forming, beta subunit Details for - - succinate-Coenzyme A ligase, ADP-forming, beta subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20916 Tuberculist Genomic Region	53945 solute carrier family 40 (iron-regulated transporter), member 1 Details for - - solute carrier family 40 (iron-regulated transporter), member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53945 Tuberculist Genomic Region
58230 ring finger protein 8 Details for - - ring finger protein 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 58230 Tuberculist Genomic Region	66526 transcription elongation factor A (SII) N-terminal and central domain containing 2 Details for - - transcription elongation factor A (SII) N-terminal and central domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66526 Tuberculist Genomic Region
66983 zinc finger protein 830 Details for RP23-316C11.5 - zinc finger protein 830 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66983 Tuberculist Genomic Region	67143 IKAROS family zinc finger 5 Details for - - IKAROS family zinc finger 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67143 Tuberculist Genomic Region
68263 pyruvate dehydrogenase (lipoamide) beta Details for - - pyruvate dehydrogenase (lipoamide) beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68263 Tuberculist Genomic Region	72655 small nucleolar RNA host gene 5 Details for - - small nucleolar RNA host gene 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72655 Tuberculist Genomic Region
76547 transmembrane protein 101 Details for RP23-167N11.1 - transmembrane protein 101 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76547 Tuberculist Genomic Region	107197 expressed sequence AI462493 Details for - - expressed sequence AI462493 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107197 Tuberculist Genomic Region
19286 6-pyruvoyl-tetrahydropterin synthase Details for - - 6-pyruvoyl-tetrahydropterin synthase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19286 Tuberculist Genomic Region	19352 RAB geranylgeranyl transferase, b subunit Details for - - RAB geranylgeranyl transferase, b subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19352 Tuberculist Genomic Region
19769 Ras-like without CAAX 1 Details for - - Ras-like without CAAX 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19769 Tuberculist Genomic Region	21881 transketolase Details for - - transketolase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21881 Tuberculist Genomic Region
22083 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Details for - - Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22083 Tuberculist Genomic Region	227753 gelsolin Details for RP23-186B18.2 - gelsolin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227753 Tuberculist Genomic Region
330502 zinc finger protein 82 Details for - - zinc finger protein 82 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 330502 Tuberculist Genomic Region	52683 non-SMC condensin II complex, subunit H2 Details for - - non-SMC condensin II complex, subunit H2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52683 Tuberculist Genomic Region
66861 DnaJ (Hsp40) homolog, subfamily C, member 10 Details for RP23-282M14.2 - DnaJ (Hsp40) homolog, subfamily C, member 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66861 Tuberculist Genomic Region	67151 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67151 Tuberculist Genomic Region
67707 mitochondrial ribosomal protein L24 Details for - - mitochondrial ribosomal protein L24 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67707 Tuberculist Genomic Region	68735 mitochondrial ribosomal protein S18C Details for - - mitochondrial ribosomal protein S18C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68735 Tuberculist Genomic Region
69125 CCR4-NOT transcription complex, subunit 8 Details for RP23-293I3.1 - CCR4-NOT transcription complex, subunit 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69125 Tuberculist Genomic Region	70385 spindle apparatus coiled-coil protein 1 Details for RP23-329D21.1 - spindle apparatus coiled-coil protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70385 Tuberculist Genomic Region
70415 RIKEN cDNA 2610018G03 gene Details for RP23-245F8.1 - RIKEN cDNA 2610018G03 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70415 Tuberculist Genomic Region	71862 G protein-coupled receptor 160 Details for - - G protein-coupled receptor 160 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71862 Tuberculist Genomic Region
80280 CDK5 regulatory subunit associated protein 3 Details for RP23-353J21.7 - CDK5 regulatory subunit associated protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80280 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
Rara.2	0.464286	0.0000659

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00015	GGGGGGCGGGGC	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP1_Q6_M00196, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$SP1_Q6_01_M00931, V$SP1_Q2_01_M00933, V$GKLF_02_M01588, V$SP1_03_M02281, V$ZFP281_01_M01597, V$UF1H3BETA_Q6_M01068, V$KLF7_03_M02773, V$GC_01_M00255, V$SP1_02_M01303, V$SP4_03_M02810, V$MAZR_01_M00491, V$KROX_Q6_M00982, V$ZFP281_04_M02831, V$SP2_01_M01783, V$EGR1_Q6_M01873, V$EGR1_06_M02744, V$SMAD4_04_M02898, V$ZNF219_01_M01122, V$ZBP89_Q4_M01816, V$CKROX_Q2_M01175, V$SP1_01_M00008, V$CACD_01_M01113, V$MAZ_Q6_01_M02023, V$E2F3_Q6_M02089, V$EKLF_Q5_M01874, V$ZFP740_03_M02834, V$MAZ_Q6_M00649, V$WT1_Q6_01_M02036, V$SP1SP3_Q4_M01219, V$BCL6B_04_M02844, V$EGR_Q6_M00807, V$CACBINDINGPROTEIN_Q6_M00720, V$KLF15_Q2_M01714, V$ETF_Q6_M00695, V$CACCCBINDINGFACTOR_Q6_M00721, V$ZFP410_04_M02936, V$FKLF_Q5_M01837, V$SP4_04_M02914, Klf7.1, Sp4.1, Zfp281.2, Egr1.1, Smad3.1, Zfp740.1, Bcl6b.2, Zif268.1, Zfp410.1, Sp4.2, Ascl2.2, Sox13.2, SP4_C2H2_full_monomeric_17_1, KLF16_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, KLF14_C2H2_DBD_monomeric_14_1, SP1_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, ZNF740_C2H2_full_monomeric_10_1, Klf12_C2H2_DBD_monomeric_15_1, Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1, KLF13_C2H2_full_monomeric_18_1, Zfp740_C2H2_DBD_monomeric_10_1	0.00049	TYTTNTTTTNNT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.32	CGGTCG	NA	1.51	TCGCGGTC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.6	GTAAGG	NA	NA	0.59	TGTAAGGA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments