TargetScan_227 megaCluster: 8 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_227 8 0.18 15 0 0.931069 0

Members

Displaying 1 - 24 of 24
230376 HAUS augmin-like complex, subunit 6

Details for RP23-95O1.3 - HAUS augmin-like complex, subunit 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230376

Tuberculist Genomic Region

231866 zinc finger protein 12

Details for - - zinc finger protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231866

Tuberculist Genomic Region

67036 mitochondrial ribosomal protein L45

Details for RP23-157O10.1 - mitochondrial ribosomal protein L45

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67036

Tuberculist Genomic Region

11364 acyl-Coenzyme A dehydrogenase, medium chain

Details for - - acyl-Coenzyme A dehydrogenase, medium chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11364

Tuberculist Genomic Region

15191 hepatoma-derived growth factor

Details for - - hepatoma-derived growth factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15191

Tuberculist Genomic Region

16319 inner centromere protein

Details for - - inner centromere protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16319

Tuberculist Genomic Region

170718 isocitrate dehydrogenase 3 (NAD+) beta

Details for RP23-20A6.5 - isocitrate dehydrogenase 3 (NAD+) beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170718

Tuberculist Genomic Region

170762 nucleoporin 155

Details for - - nucleoporin 155

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170762

Tuberculist Genomic Region

17535 meiotic recombination 11 homolog A (S. cerevisiae)

Details for RP23-149D5.3 - meiotic recombination 11 homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17535

Tuberculist Genomic Region

18861 postmeiotic segregation increased 2 (S. cerevisiae)

Details for - - postmeiotic segregation increased 2 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18861

Tuberculist Genomic Region

208194 endo/exonuclease (5'-3'), endonuclease G-like

Details for - - endo/exonuclease (5'-3'), endonuclease G-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208194

Tuberculist Genomic Region

236790 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B

Details for - - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236790

Tuberculist Genomic Region

238831 peptidylprolyl isomerase domain and WD repeat containing 1

Details for - - peptidylprolyl isomerase domain and WD repeat containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238831

Tuberculist Genomic Region

27214 DBF4 homolog (S. cerevisiae)

Details for - - DBF4 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27214

Tuberculist Genomic Region

56459 SUMO1 activating enzyme subunit 1

Details for - - SUMO1 activating enzyme subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56459

Tuberculist Genomic Region

57320 Parkinson disease (autosomal recessive, early onset) 7

Details for RP23-272N19.5 - Parkinson disease (autosomal recessive, early onset) 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57320

Tuberculist Genomic Region

66945 succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

Details for - - succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66945

Tuberculist Genomic Region

66949 tripartite motif-containing 59

Details for - - tripartite motif-containing 59

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66949

Tuberculist Genomic Region

67130 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67130

Tuberculist Genomic Region

68964 CTS telomere maintenance complex component 1

Details for RP23-19I2.2 - CTS telomere maintenance complex component 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68964

Tuberculist Genomic Region

70099 structural maintenance of chromosomes 4

Details for - - structural maintenance of chromosomes 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70099

Tuberculist Genomic Region

70218 kinesin family member 18B

Details for RP23-463E7.6 - kinesin family member 18B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70218

Tuberculist Genomic Region

74741 C2 calcium-dependent domain containing 5

Details for - - C2 calcium-dependent domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74741

Tuberculist Genomic Region

84505 SET domain, bifurcated 1

Details for - - SET domain, bifurcated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 84505

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NRF1_Q6_M00652 0.583333 0.000026

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000024 YGCGCANGCGCM V$ZFP206_01_M01742, V$NRF1_Q6_M00652, NRF1_NRF_full_dimeric_12_1 0.38 TTTYGTTTTYTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.49 GACGCG NA 1.8 NCGCGCGA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.67 NGATTATC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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