TargetScan_4 megaCluster: 10 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_4 10 0.17 13 0 0.89285 0

Members

Displaying 1 - 25 of 25
108911 regulator of chromosome condensation 2

Details for RP23-275J10.2 - regulator of chromosome condensation 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108911

Tuberculist Genomic Region

109169 IgA inducing protein

Details for - - IgA inducing protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109169

Tuberculist Genomic Region

110173 mannosidase, beta A, lysosomal

Details for - - mannosidase, beta A, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110173

Tuberculist Genomic Region

14235 forkhead box M1

Details for - - forkhead box M1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14235

Tuberculist Genomic Region

15288 hydroxymethylbilane synthase

Details for - - hydroxymethylbilane synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15288

Tuberculist Genomic Region

17220 minichromosome maintenance deficient 7 (S. cerevisiae)

Details for - - minichromosome maintenance deficient 7 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17220

Tuberculist Genomic Region

18968 polymerase (DNA directed), alpha 1

Details for RP23-53K18.2 - polymerase (DNA directed), alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18968

Tuberculist Genomic Region

20460 Scl/Tal1 interrupting locus

Details for RP23-295C20.5 - Scl/Tal1 interrupting locus

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20460

Tuberculist Genomic Region

207965 valosin containing protein lysine (K) methyltransferase

Details for - - valosin containing protein lysine (K) methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 207965

Tuberculist Genomic Region

20877 aurora kinase B

Details for RP23-19I2.1 - aurora kinase B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20877

Tuberculist Genomic Region

215387 non-SMC condensin I complex, subunit H

Details for - - non-SMC condensin I complex, subunit H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215387

Tuberculist Genomic Region

217216 cDNA sequence BC030867

Details for RP23-461C4.3 - cDNA sequence BC030867

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217216

Tuberculist Genomic Region

218973 WD repeat and HMG-box DNA binding protein 1

Details for - - WD repeat and HMG-box DNA binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218973

Tuberculist Genomic Region

238505 5-methyltetrahydrofolate-homocysteine methyltransferase

Details for - - 5-methyltetrahydrofolate-homocysteine methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238505

Tuberculist Genomic Region

328186 predicted gene 10336

Details for - - predicted gene 10336

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328186

Tuberculist Genomic Region

54486 hematopoietic prostaglandin D synthase

Details for - - hematopoietic prostaglandin D synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54486

Tuberculist Genomic Region

54633 polyglutamine binding protein 1

Details for RP23-443E19.4 - polyglutamine binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54633

Tuberculist Genomic Region

66821 BCS1-like (yeast)

Details for - - BCS1-like (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66821

Tuberculist Genomic Region

66929 ASF1 anti-silencing function 1 homolog B (S. cerevisiae)

Details for - - ASF1 anti-silencing function 1 homolog B (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66929

Tuberculist Genomic Region

71643 RIKEN cDNA 4930422G04 gene

Details for - - RIKEN cDNA 4930422G04 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71643

Tuberculist Genomic Region

71988 establishment of cohesion 1 homolog 2 (S. cerevisiae)

Details for - - establishment of cohesion 1 homolog 2 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71988

Tuberculist Genomic Region

72155 centromere protein N

Details for - - centromere protein N

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72155

Tuberculist Genomic Region

76594 DnaJ (Hsp40) homolog, subfamily C, member 18

Details for - - DnaJ (Hsp40) homolog, subfamily C, member 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76594

Tuberculist Genomic Region

77219 prostaglandin reductase 2

Details for - - prostaglandin reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77219

Tuberculist Genomic Region

78833 GINS complex subunit 3 (Psf3 homolog)

Details for - - GINS complex subunit 3 (Psf3 homolog)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78833

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_PPARA_02_M00518 0.625 0.0000269

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
53 TTTCATYTTTYA NA 550 GAAAGANAAGK NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.22 CGGCGA NA 1.59 GCGCCGTT E2F3.1, E2F2.1, E2F2.2, E2F3.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.53 CATATC NA NA 0.62 TCATATCC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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