TargetScan_54 megaCluster: 6 Residual: 0.36

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_54 6 0.36 14 0 0.774587 0.007

Members

Displaying 1 - 50 of 50
100043636 expressed sequence AI662270

Details for - - expressed sequence AI662270

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100043636

Tuberculist Genomic Region

12409 predicted gene, 19886

Details for - - predicted gene, 19886

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503773

Tuberculist Genomic Region

12452 predicted gene, 19983

Details for - - predicted gene, 19983

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503948

Tuberculist Genomic Region

12578 carbonyl reductase 2

Details for RP23-84C12.20-001 - carbonyl reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12409

Tuberculist Genomic Region

14133 cyclin G2

Details for - - cyclin G2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12452

Tuberculist Genomic Region

14595 CD9 antigen

Details for - - CD9 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12527

Tuberculist Genomic Region

14866 cyclin-dependent kinase inhibitor 2A

Details for RP23-166I8.5 - cyclin-dependent kinase inhibitor 2A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12578

Tuberculist Genomic Region

16952 ficolin A

Details for RP23-464C2.11-001 - ficolin A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14133

Tuberculist Genomic Region

19301 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1

Details for RP23-135L5.6 - UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14595

Tuberculist Genomic Region

20341 glutathione S-transferase, mu 5

Details for - - glutathione S-transferase, mu 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14866

Tuberculist Genomic Region

22381 annexin A1

Details for - - annexin A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16952

Tuberculist Genomic Region

224132 peroxisomal membrane protein 2

Details for - - peroxisomal membrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19301

Tuberculist Genomic Region

23886 selenium binding protein 1

Details for - - selenium binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20341

Tuberculist Genomic Region

320165 WW domain binding protein 5

Details for RP23-105O4.3 - WW domain binding protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22381

Tuberculist Genomic Region

387228 disrupted in renal carcinoma 2 (human)

Details for - - disrupted in renal carcinoma 2 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224132

Tuberculist Genomic Region

56421 growth differentiation factor 15

Details for - - growth differentiation factor 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23886

Tuberculist Genomic Region

69171 transforming, acidic coiled-coil containing protein 1

Details for - - transforming, acidic coiled-coil containing protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320165

Tuberculist Genomic Region

723891 microRNA 30d

Details for - - microRNA 30d

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387228

Tuberculist Genomic Region

72621 phosphofructokinase, platelet

Details for - - phosphofructokinase, platelet

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56421

Tuberculist Genomic Region

75617 cyclin Pas1/PHO80 domain containing 1

Details for - - cyclin Pas1/PHO80 domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69171

Tuberculist Genomic Region

11636 microRNA 19a

Details for - - microRNA 19a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723891

Tuberculist Genomic Region

12766 PDZ domain containing 11

Details for RP23-213F21.2 - PDZ domain containing 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72621

Tuberculist Genomic Region

12772 ribosomal protein S25

Details for - - ribosomal protein S25

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75617

Tuberculist Genomic Region

16162 adenylate kinase 1

Details for RP23-17P12.3 - adenylate kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11636

Tuberculist Genomic Region

16480 chemokine (C-X-C motif) receptor 3

Details for RP23-49C8.4 - chemokine (C-X-C motif) receptor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12766

Tuberculist Genomic Region

225058 chemokine (C-C motif) receptor 2

Details for - - chemokine (C-C motif) receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12772

Tuberculist Genomic Region

26442 high mobility group nucleosomal binding domain 1

Details for - - high mobility group nucleosomal binding domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15312

Tuberculist Genomic Region

382423 interleukin 12 receptor, beta 2

Details for - - interleukin 12 receptor, beta 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16162

Tuberculist Genomic Region

387139 junction plakoglobin

Details for RP23-392I3.6 - junction plakoglobin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16480

Tuberculist Genomic Region

54394 predicted gene 4832

Details for - - predicted gene 4832

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225058

Tuberculist Genomic Region

66663 proteasome (prosome, macropain) subunit, alpha type 5

Details for RP23-27B23.2 - proteasome (prosome, macropain) subunit, alpha type 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26442

Tuberculist Genomic Region

67117 ataxin 7-like 3B

Details for - - ataxin 7-like 3B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382423

Tuberculist Genomic Region

74467 microRNA 20a

Details for - - microRNA 20a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387139

Tuberculist Genomic Region

77604 cytokine receptor-like factor 3

Details for RP23-253E9.5 - cytokine receptor-like factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54394

Tuberculist Genomic Region

104184 ubiquitin-like modifier activating enzyme 5

Details for - - ubiquitin-like modifier activating enzyme 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66663

Tuberculist Genomic Region

13723 dynein light chain Tctex-type 3

Details for RP23-256J17.2 - dynein light chain Tctex-type 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67117

Tuberculist Genomic Region

13849 pseudouridylate synthase 10

Details for RP23-164N15.2 - pseudouridylate synthase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74467

Tuberculist Genomic Region

16985 RNA binding motif protein 12 B2

Details for RP23-203A12.6 - RNA binding motif protein 12 B2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77604

Tuberculist Genomic Region

52120 bleomycin hydrolase

Details for RP23-100P23.3 - bleomycin hydrolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104184

Tuberculist Genomic Region

56354 embigin

Details for - - embigin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13723

Tuberculist Genomic Region

66413 epoxide hydrolase 1, microsomal

Details for - - epoxide hydrolase 1, microsomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13849

Tuberculist Genomic Region

68099 lymphocyte specific 1

Details for AL603651.4 - lymphocyte specific 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16985

Tuberculist Genomic Region

76846 heparan-alpha-glucosaminide N-acetyltransferase

Details for - - heparan-alpha-glucosaminide N-acetyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52120

Tuberculist Genomic Region

18472 DnaJ (Hsp40) homolog, subfamily C, member 7

Details for RP23-390D17.1 - DnaJ (Hsp40) homolog, subfamily C, member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56354

Tuberculist Genomic Region

50875 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6

Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66413

Tuberculist Genomic Region

99730 family with sequence similarity 92, member A

Details for RP24-215D6.5 - family with sequence similarity 92, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68099

Tuberculist Genomic Region

Details for - - ribosomal protein S9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76846

Tuberculist Genomic Region

Details for RP23-194P5.2 - platelet-activating factor acetylhydrolase, isoform 1b, subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18472

Tuberculist Genomic Region

Details for - - tropomodulin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50875

Tuberculist Genomic Region

Details for RP23-128G10.3 - TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99730

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRX2_homeodomain_DBD_dimeric_12_1 0.136364 0.00000481

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000000018 AAAMAAAANAAA NA 0.023 NARRAAGGAAR NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.88 CTGCGC Zfp161.2 0.96 GGCGRAGC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.55 CGGCGT NA NA 0.49 CCGNGTTA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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