TargetScan_57 megaCluster: 3 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_57 3 0.21 15 0 0.912772 0

Members

Displaying 1 - 58 of 58
100503552 predicted gene, 19765

Details for - - predicted gene, 19765

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503552

Tuberculist Genomic Region

100504323 predicted gene, 20169

Details for - - predicted gene, 20169

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504320

Tuberculist Genomic Region

104215 predicted gene, 20172

Details for - - predicted gene, 20172

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504323

Tuberculist Genomic Region

12046 ras homolog gene family, member Q

Details for - - ras homolog gene family, member Q

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104215

Tuberculist Genomic Region

142688 B cell leukemia/lymphoma 2 related protein A1c

Details for - - B cell leukemia/lymphoma 2 related protein A1c

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12046

Tuberculist Genomic Region

17096 ankyrin repeat and SOCS box-containing 13

Details for - - ankyrin repeat and SOCS box-containing 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 142688

Tuberculist Genomic Region

432702 Yamaguchi sarcoma viral (v-yes-1) oncogene homolog

Details for RP23-49A12.2 - Yamaguchi sarcoma viral (v-yes-1) oncogene homolog

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17096

Tuberculist Genomic Region

70249 immunoglobulin heavy variable 1-4

Details for - - immunoglobulin heavy variable 1-4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432702

Tuberculist Genomic Region

723849 RIKEN cDNA 3100002H09 gene

Details for - - RIKEN cDNA 3100002H09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70249

Tuberculist Genomic Region

791293 microRNA 34b

Details for - - microRNA 34b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723849

Tuberculist Genomic Region

100124347 predicted gene 9948

Details for - - predicted gene 9948

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791293

Tuberculist Genomic Region

100216537 T cell receptor alpha joining 41

Details for - - T cell receptor alpha joining 41

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100124347

Tuberculist Genomic Region

12488 small nucleolar RNA, C/D box 104

Details for - - small nucleolar RNA, C/D box 104

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100216537

Tuberculist Genomic Region

20684 CD2-associated protein

Details for - - CD2-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12488

Tuberculist Genomic Region

226691 translocating chain-associating membrane protein 2

Details for - - translocating chain-associating membrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170829

Tuberculist Genomic Region

270084 platelet-activating factor receptor

Details for RP23-470B20.1 - platelet-activating factor receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19204

Tuberculist Genomic Region

56382 nuclear antigen Sp100

Details for - - nuclear antigen Sp100

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20684

Tuberculist Genomic Region

64381 expressed sequence AI607873

Details for - - expressed sequence AI607873

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226691

Tuberculist Genomic Region

723902 lysophosphatidylcholine acyltransferase 2

Details for - - lysophosphatidylcholine acyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 270084

Tuberculist Genomic Region

74081 RAB9, member RAS oncogene family

Details for RP23-408K4.3 - RAB9, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56382

Tuberculist Genomic Region

80752 membrane-spanning 4-domains, subfamily A, member 8A

Details for - - membrane-spanning 4-domains, subfamily A, member 8A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64381

Tuberculist Genomic Region

100033459 microRNA 7-1

Details for - - microRNA 7-1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723902

Tuberculist Genomic Region

100715 centrosomal protein 350

Details for - - centrosomal protein 350

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74081

Tuberculist Genomic Region

108960 family with sequence similarity 20, member C

Details for - - family with sequence similarity 20, member C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80752

Tuberculist Genomic Region

12363 pyrin domain containing 3

Details for - - pyrin domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100033459

Tuberculist Genomic Region

12393 PAP associated domain containing 4

Details for - - PAP associated domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100715

Tuberculist Genomic Region

14289 interleukin-1 receptor-associated kinase 2

Details for - - interleukin-1 receptor-associated kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108960

Tuberculist Genomic Region

142980 caspase 4, apoptosis-related cysteine peptidase

Details for - - caspase 4, apoptosis-related cysteine peptidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12363

Tuberculist Genomic Region

14726 runt related transcription factor 2

Details for - - runt related transcription factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12393

Tuberculist Genomic Region

15945 formyl peptide receptor 2

Details for - - formyl peptide receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14289

Tuberculist Genomic Region

16365 toll-like receptor 3

Details for - - toll-like receptor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 142980

Tuberculist Genomic Region

20847 podoplanin

Details for RP23-348F1.2 - podoplanin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14726

Tuberculist Genomic Region

20853 chemokine (C-X-C motif) ligand 10

Details for - - chemokine (C-X-C motif) ligand 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15945

Tuberculist Genomic Region

212167 immunoresponsive gene 1

Details for - - immunoresponsive gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16365

Tuberculist Genomic Region

21825 signal transducer and activator of transcription 2

Details for - - signal transducer and activator of transcription 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20847

Tuberculist Genomic Region

231430 staufen (RNA binding protein) homolog 1 (Drosophila)

Details for RP23-19L12.1 - staufen (RNA binding protein) homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20853

Tuberculist Genomic Region

240921 gamma-secretase activating protein

Details for - - gamma-secretase activating protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212167

Tuberculist Genomic Region

54004 thrombospondin 1

Details for RP23-234E8.1 - thrombospondin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21825

Tuberculist Genomic Region

56738 cytochrome c oxidase assembly protein 18

Details for - - cytochrome c oxidase assembly protein 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231430

Tuberculist Genomic Region

69538 predicted gene 4955

Details for - - predicted gene 4955

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240921

Tuberculist Genomic Region

77987 diaphanous homolog 2 (Drosophila)

Details for - - diaphanous homolog 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54004

Tuberculist Genomic Region

14747 molybdenum cofactor synthesis 1

Details for - - molybdenum cofactor synthesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56738

Tuberculist Genomic Region

17387 anthrax toxin receptor 1

Details for - - anthrax toxin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69538

Tuberculist Genomic Region

20354 activating signal cointegrator 1 complex subunit 3

Details for - - activating signal cointegrator 1 complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77987

Tuberculist Genomic Region

209630 chemokine-like receptor 1

Details for - - chemokine-like receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14747

Tuberculist Genomic Region

212943 matrix metallopeptidase 14 (membrane-inserted)

Details for - - matrix metallopeptidase 14 (membrane-inserted)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17387

Tuberculist Genomic Region

21923 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

Details for - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20354

Tuberculist Genomic Region

223693 FERM domain containing 4A

Details for RP23-198D21.2 - FERM domain containing 4A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209630

Tuberculist Genomic Region

230073 family with sequence similarity 46, member A

Details for - - family with sequence similarity 46, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212943

Tuberculist Genomic Region

399558 tenascin C

Details for RP24-144L11.1 - tenascin C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21923

Tuberculist Genomic Region

623121 transmembrane protein 184b

Details for - - transmembrane protein 184b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223693

Tuberculist Genomic Region

67712 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

Details for RP23-9F23.2 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230073

Tuberculist Genomic Region

80719 fibronectin leucine rich transmembrane protein 2

Details for - - fibronectin leucine rich transmembrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 399558

Tuberculist Genomic Region

98999 pyrin domain containing 4

Details for - - pyrin domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 623121

Tuberculist Genomic Region

80910 solute carrier family 25, member 37

Details for - - solute carrier family 25, member 37

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67712

Tuberculist Genomic Region

Details for - - immunoglobulin superfamily, member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80719

Tuberculist Genomic Region

Details for RP23-19L12.5 - zinc finger, NFX1-type containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98999

Tuberculist Genomic Region

Details for - - G protein-coupled receptor 84

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80910

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ISGF3G_03_M02771 0.229167 0.0000000227

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
3.8e-30 ARAAAARAAAAA NA 0.0000000000089 ARNAAANWGAAA IRF1_MA0050.1, STAT1_MA0137.1, IRF2_MA0051.1, V$ISRE_01_M00258, V$IRF1_Q6_01_M01881, V$IRF2_Q6_M01882, V$IRF_Q6_01_M00972, V$IRF1_01_M00062, V$ICSBP_Q6_M00699, V$IRF_Q6_M00772, V$IRF2_01_M00063, V$IRF1_Q6_M00747, V$IRF7_01_M00453, V$IRF7_Q3_M01884, V$ISGF3G_03_M02771, V$IRF3_05_M02767

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.67 CCGCTTGG NA NA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.42 TACCCA NA NA 0.48 ACCNTCCA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-101b 0.205128 0.00000482

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