TargetScan_97 megaCluster: 7 Residual: 0.15 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_97	7	0.15	15	0	0.961412	0

Members

Displaying 1 - 28 of 28

106633 intraflagellar transport 140 Details for - - intraflagellar transport 140 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106633 Tuberculist Genomic Region	17939 N-acetyl galactosaminidase, alpha Details for - - N-acetyl galactosaminidase, alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17939 Tuberculist Genomic Region
216805 folliculin Details for RP23-180B18.1 - folliculin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216805 Tuberculist Genomic Region	22594 X-ray repair complementing defective repair in Chinese hamster cells 1 Details for - - X-ray repair complementing defective repair in Chinese hamster cells 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22594 Tuberculist Genomic Region
227099 postmeiotic segregation increased 1 (S. cerevisiae) Details for - - postmeiotic segregation increased 1 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227099 Tuberculist Genomic Region	230514 leptin receptor overlapping transcript Details for RP23-31K16.1 - leptin receptor overlapping transcript GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230514 Tuberculist Genomic Region
235339 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) Details for - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 235339 Tuberculist Genomic Region	239839 coiled-coil domain containing 14 Details for - - coiled-coil domain containing 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 239839 Tuberculist Genomic Region
26889 ceroid-lipofuscinosis, neuronal 8 Details for - - ceroid-lipofuscinosis, neuronal 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26889 Tuberculist Genomic Region	27267 cysteinyl-tRNA synthetase Details for - - cysteinyl-tRNA synthetase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27267 Tuberculist Genomic Region
56357 isovaleryl coenzyme A dehydrogenase Details for RP23-172B16.1 - isovaleryl coenzyme A dehydrogenase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56357 Tuberculist Genomic Region	56401 leprecan 1 Details for RP23-344D2.11-004 - leprecan 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56401 Tuberculist Genomic Region
66822 F-box protein 25 Details for - - F-box protein 25 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66822 Tuberculist Genomic Region	67015 coiled-coil domain containing 91 Details for RP23-298K1.1 - coiled-coil domain containing 91 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67015 Tuberculist Genomic Region
69596 adaptor-related protein 5 complex, sigma 1 subunit Details for RP23-387C21.2 - adaptor-related protein 5 complex, sigma 1 subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69596 Tuberculist Genomic Region	73658 spinster homolog 1 Details for - - spinster homolog 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73658 Tuberculist Genomic Region
80743 vacuolar protein sorting 16 (yeast) Details for RP23-29K12.8 - vacuolar protein sorting 16 (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80743 Tuberculist Genomic Region	98193 DDB1 and CUL4 associated factor 8 Details for - - DDB1 and CUL4 associated factor 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 98193 Tuberculist Genomic Region
100972 RAB28, member RAS oncogene family Details for - - RAB28, member RAS oncogene family GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100972 Tuberculist Genomic Region	170749 myotubularin related protein 4 Details for RP23-168C20.3 - myotubularin related protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170749 Tuberculist Genomic Region
18041 nitrogen fixation gene 1 (S. cerevisiae) Details for RP23-220D12.8 - nitrogen fixation gene 1 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18041 Tuberculist Genomic Region	212647 aldehyde dehydrogenase 4 family, member A1 Details for RP23-334I5.1 - aldehyde dehydrogenase 4 family, member A1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 212647 Tuberculist Genomic Region
216440 amplified in osteosarcoma Details for - - amplified in osteosarcoma GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216440 Tuberculist Genomic Region	327762 DNA replication helicase 2 homolog (yeast) Details for - - DNA replication helicase 2 homolog (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 327762 Tuberculist Genomic Region
68927 pentatricopeptide repeat domain 2 Details for - - pentatricopeptide repeat domain 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68927 Tuberculist Genomic Region	69962 methyltransferase like 18 Details for - - methyltransferase like 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69962 Tuberculist Genomic Region
72772 RAD50 interactor 1 Details for - - RAD50 interactor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72772 Tuberculist Genomic Region	105513 charged multivesicular body protein 7 Details for - - charged multivesicular body protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105513 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
13	AAAAMARNAAA	NA	30000	AGGGGCGGRGCC	SP1_MA0079.2, Klf4_MA0039.2, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP1_Q2_01_M00933, V$SP2_01_M01783, V$SP1_02_M01303, V$KLF7_03_M02773, V$ETF_Q6_M00695, V$MAZR_01_M00491, V$SP1_03_M02281, V$SP4_03_M02810, V$GKLF_02_M01588, V$BCL6B_04_M02844, V$CKROX_Q2_M01175, V$E2F3_Q6_M02089, V$ZBP89_Q4_M01816, V$SP1_01_M00008, V$ZFP281_01_M01597, V$UF1H3BETA_Q6_M01068, V$SMAD4_04_M02898, V$SP4_04_M02914, V$ZFP410_04_M02936, V$EGR1_Q6_M01873, V$MAZ_Q6_M00649, V$SP1SP3_Q4_M01219, Klf7.1, Sp4.1, Bcl6b.2, Smad3.1, Zfp410.1, Sp4.2, Egr1.1, Zfp740.1, Zfp281.2, Gcm1.2, SP1_C2H2_DBD_monomeric_11_1, SP4_C2H2_full_monomeric_17_1, KLF13_C2H2_full_monomeric_18_1, KLF14_C2H2_DBD_monomeric_14_1, KLF16_C2H2_DBD_monomeric_11_1, Klf12_C2H2_DBD_monomeric_15_1, SP3_C2H2_DBD_monomeric_11_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.31	GACGCG	NA	1.44	CCGCACGA	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.69	TCGCGT	NA	NA	0.78	NGGCTAGC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments