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[+] Show/hide bicluster #146 rows and columns.
bicluster 146
Mycobacterium tuberculosis H37Rv
7x253
[+] Show/hide bicluster #146 rows (genes).
bicluster 146 genes
Mycobacterium tuberculosis H37Rv
7
[+] Show/hide bicluster #146 rows (short gene names).
bicluster 146 short names
Mycobacterium tuberculosis H37Rv
7
short_name
[+] Show/hide bicluster #146 rows (long gene names).
bicluster 146 long names
Mycobacterium tuberculosis H37Rv
7
long_name
[+] Show/hide bicluster #146 rows (NCBI RefSeq gene IDs).
bicluster 146 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
12
[+] Show/hide bicluster #146 gene upstream sequences.
bicluster 146 upstream sequences
Mycobacterium tuberculosis H37Rv
7
upstream
[+] Show/hide bicluster #146 columns (arrays; conditions).
bicluster 146 arrays
Mycobacterium tuberculosis H37Rv
253
[+] Show/hide bicluster #146 ratios.
bicluster 146 ratios
Mycobacterium tuberculosis H37Rv
7x253
GENES 2867:::H37Ra..Dubos.media.replicate.2 2867:::H37Ra..Dubos.media.replicate.3 2867:::H37Ra..Youman.media.replicate.4 2867:::H37Rv..7H9.shake.replicate.4 2867:::H37Rv..Youman.media.replicate.4 2885:::H37Ra..7H9.roll.replicate.1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.2 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.2 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.1 4084:::High.iron.wt.vs.high.iron.ideR.Complement.1a 4084:::High.iron.wt.vs.high.iron.ideR.KO.2a 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4084:::High.iron.wt.vs.low.iron.wt.3a 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.vs..MTB1254.rep4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.6 4100:::H37Rv.0.2..Oxygen..2h..1 4100:::H37Rv.0.2..Oxygen..2h..5 4101:::H37Rv.Day60.1 4101:::H37Rv.Day60.2 4101:::NRP.Day14..1 4101:::NRP.Day14..7 4101:::NRP.Day14..8 4107:::DIPED..50ug.mL..DMSO..12h 4107:::DIPED.10ug.mL.vs.DMSO.12h.1 4107:::DIPED.10ug.mL.vs.DMSO.12h.2 4107:::DIPED.50ug.mL.vs.DMSO.12h.2 4107:::pH4.8vspH6.8..4h.A 4107:::pH5.2vspH6.8..16h. 4107:::Rif.0.5ug.mL.vsDMSO.2.5hA 4107:::Rif.5ug.mL.vsDMSO.2.5hA 4107:::WT.t.6h.WT.t.0h..1 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051. 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052. 4107:::X.241..10ug.mL..DMSO..12h..2 4107:::X0.12mg.mL.Nam.pH5.6..2h..2 4107:::X0.1ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2ug.mL..111891.DMSO..5.5h..3 4107:::X0.4mM.NaN3vsDMSO..4h.A 4107:::X1.ug.mL..111891vsDMSO..6h 4107:::X10mM.Succinate.10mM.Gluc..1 4107:::X10mM.Succinate.10mM.Gluc..2 4107:::X10ug.mL.LevovsEtOH..6hA 4107:::X10ug.mL.OfloxvsDMSO..6h 4107:::X10ug.mL.PA.21vsDMSO..6hA 4107:::X13ug.mL.clfzine.DMSO..6h..1 4107:::X150uM.Deferroxaminevsctrl..6hB 4107:::X1ug.mL..111895vsDMSO..6h 4107:::X1ug.mL..124196vsDMSO..6h 4107:::X1ug.mL..241vsDMSO..6hA 4107:::X20ug.mL.Cephalexin.Ctrl..6h..1 4107:::X20ug.mL.chlorprmz.DMSO..6h..2 4107:::X25J.UVvs.ctrl..6h. 4107:::X30ug.mLProcept6776vsDMSO.6h 4107:::X40ug.mLProcept6778vsDMSO.6h 4107:::X5ug.mL.OfloxvsEtOH..6h 4107:::X5ug.mL.OfloxvsEtOH..6hA 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4hr.rep.5 4363:::H37Rv.hypoxia.7.day.rep.2 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4364:::H37dosR.mutant.hypoxia.4hr.rep.2 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4365:::H37Rv.diamide.1h.rep.2 4365:::H37Rv.diamide.1h.rep.4 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.5 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.4 4575:::Extracted.Lung.Surfactant.30min.rep.2 4575:::Extracted.Lung.Surfactant.30min.rep.4 4575:::Whole.Lung.Surfactant.2hrs.rep.2 4581:::H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.2 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.3 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.1 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages.rep.1 4615:::AA_10uM_2h_T0_01 4615:::AA_30uM_10.min_05 4615:::AA_30uM_10.min_06 4615:::AA_30uM_10.min_07 4615:::AA_30uM_1h_04 4615:::AA_30uM_24h_T0_01 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_2h_04 4615:::AA_30uM_30min_08 4615:::AA_30uM_4h_03 4615:::AA_30uM_4h_04 4615:::AA_3uM_2h_T0_01 4615:::AA_60uM_24h_01 4615:::AA_60uM_2h_T0_01 4615:::aceatate.induction.1 4615:::Acetate.3mM.60m.04 4615:::CHP_25uM_2h_01 4615:::CK_OA_NA_2h.02 4615:::CK.for.AA.NA.2h.2 4615:::CK.for.MDG.OA.Na.24h 4615:::ETYA_10uM_1h_02 4615:::ETYA_30uM_10min.03 4615:::ETYA_3uM_1h_02 4615:::Glucose_40mM_1h.OA_50uM_10min 4615:::Glycerol_1. 4615:::Glycerol_1._10M_01 4615:::Glycerol_1._30M_01 4615:::L2A_30uM_1h_04 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_2h_02 4615:::L2A_30uM_2h_05 4615:::L2A_30uM_4h_08 4615:::L2A_30uM_4h_T0_01 4615:::MDGCy3.7H9Cy5.03 4615:::MTB1254.0485.1._PA_10m_01 4615:::MTB1254.0485.1._PA_10m_04 4615:::MTB1254.0485.1._PA_12h_04 4615:::MTB1254.0485.1._PA_30m_04 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1._PA_4h_01 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._PA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_02 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_05 4615:::OA_50uM_10min_07 4615:::OA_50uM_10min.Glu_40mM_20min_01 4615:::OA_50uM_1h_05 4615:::OA_50uM_2h_01 4615:::OA_50uM_30min_02 4615:::OA_50uM_4h_07 4615:::PA_100uM_2h_03 4615:::PA_10uM_10.min_01 4615:::PA_10uM_10min_02 4615:::PA_25uM_2h_T0_01 4615:::PA_5.uM_10min_02 4615:::PA_50uM_10.min_02 4615:::PA_50uM_10min_01 4615:::PA_50uM_10min_05 4615:::PA_50uM_12h_02 4615:::PA_50uM_1h_06 4615:::PA_50uM_1h_07 4615:::PA_50uM_24h_07 4615:::PA_50uM_24h_10 4615:::PA_50uM_2h_01 4615:::PA_50uM_30.min_04 4615:::PA_50uM_3d_05 4615:::PA_50uM_4h_05 4615:::PA_50uM_8h_02 4615:::PA_50uM_8h_04 4615:::PA_50uM_8h_06 4615:::PA_50uM.AA_30uM_30min_02 4615:::PA_5uM_2h_T0_01 4615:::Rv_Rv3524.1 4615:::Rv.MT71_100603_01 4615:::Rv.MT71_100703_01 4615:::Rv.MT90_100703_01 4615:::Starvation_1254_6h_08 4615:::Starvation_1254_OA50_6h_02 4615:::Starvation_1254_PA50.OA30_24h_02 4615:::Starvation_OA50_24h_03 4615:::Starvation_OA50_6h_04 4615:::TBD091 4615:::TBD099 4615:::TBE735 4615:::Test_361.2 4615:::Test_361.3 4615:::Tet_5ug_30M_01 4615:::WM_1254_10d_01 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4731:::X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs 4731:::X10ug.ml.Ethambutol.vs.DMSO.12hrs.3 4731:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.5 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.3 4815:::H37Rv.reaeration.for.12hrs.rep.2 4815:::H37Rv.reaeration.for.1hrs.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.3 4815:::H37Rv.reaeration.for.24hrs.rep.5 4815:::H37Rv.reaeration.for.4hrs.rep.1 4815:::H37Rv.reaeration.for.4hrs.rep.3 4815:::H37Rv.reaeration.for.4hrs.rep.5 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.3 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.2 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.1 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.2 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.3 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.4 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2 Raghavan_Nature2008:::espR.mutant..R...rep2 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.6.5.7H9.broth.for.2.hr Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.24.hr.after.macrophage.infection
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RV3640C NA NA NA NA NA -0.274792531638613 0.770846582258966 0.674490759476595 0.240889556955927 0.0879770555839037 0.351908222335615 0.293256851946346 0.439885277919519 -0.117302740778538 0.938421926228306 -1.08505035220148 -0.469210963114153 0.146628425973173 -0.351908222335615 -0.234605481557077 -0.762467815060499 NA -0.351908222335615 0.146628425973173 NA NA NA 0.55 -0.6 -0.6 0.25 -0.122634683541199 -0.981077468329593 0.286147594929465 -0.0408782278470664 0.89932101263546 0.694929873400128 -0.204391139235332 1.22634683541199 0.858442784788394 -0.163512911388266 1.26722506325906 -0.204391139235332 NA 0.375 1.575 0.87287039461677 0.991898175700875 -0.674490759476595 -0.198379635140175 -1.11092595678498 1.28153244300553 0.831871936687801 0.96677008858312 1.73119294932326 0.292279329106525 -0.0224830253158865 3.26003867080354 4.13687665812312 0.0674490759476595 2.31575160753631 0.89932101263546 2.56306488601106 -0.382211430370071 0.202347227842979 -0.202347227842979 -0.96677008858312 2.02347227842979 -0.134898151895319 NA -3.41741984801475 0.876837987319574 0.764422860740141 -0.607041683528936 NA -0.337245379738298 -0.831871936687801 -0.157381177211206 -0.786905886056028 0.494626556949503 NA -1.12415126579433 0.741939835424255 -0.134898151895319 0.51710958226539 0.51710958226539 NA NA NA NA NA NA NA -1.14663429111021 0.269796303790638 NA NA 0.1 0 0.4 -0.174062131477831 -2.16127146584973 -0.957341723128071 0.495195747463829 1.07918521516255 NA NA NA NA NA NA NA -0.306586708852998 1.47161620249439 1.83952025311799 0.950418797444293 0.337245379738298 -2.29940031639748 -0.797125443017794 -0.337245379738298 -0.919760126558994 0.0613173417705995 -0.490538734164797 -1.25700550629729 -0.827784113903094 3.55640582269477 NA -0.981077468329593 -0.827784113903094 -1.28766417718259 -0.183952025311799 0.0613173417705995 0.275928037967698 0.490538734164796 0.705149430361895 0.674490759476595 -1.37964018983849 -1.65556822780619 -0.0613173417705996 2.23808297462688 0.122634683541199 -1.80886158223269 -0.490538734164797 0.275928037967698 NA 0.858442784788394 0.306586708852998 -0.613173417705996 -1.22634683541199 -1.19568816452669 -0.674490759476595 0.214610696197098 -0.459880063279497 -0.981077468329593 -1.62490955692089 -0.153293354426499 -0.153293354426499 -0.981077468329593 -0.0919760126558993 -3.55640582269478 -0.797125443017794 0.674490759476595 2.02347227842979 0.275928037967698 0.521197405050096 0.398562721508897 4.72143531633617 0.613173417705996 0.122634683541199 -0.214610696197099 -0.613173417705996 0.889101455673694 0.122634683541199 2.26874164551218 -0.582514746820696 1.13437082275609 -0.0919760126558993 -0.613173417705996 1.65556822780619 -0.981077468329593 NA 0.0306586708852997 0.459880063279497 -1.07305348098549 -0.858442784788394 -1.07305348098549 0.0613173417705995 -0.306586708852998 -0.214610696197099 0.245269367082398 0.459880063279497 2.08478962020039 1.25700550629729 1.44095753160909 0.950418797444293 -1.74754424046209 -0.367904050623597 0.643832088591295 0.735808101247195 -1.37964018983849 0.214610696197098 -0.214610696197099 -0.337245379738298 0.674490759476595 0.11480693778325 0.444876883910095 0 NA 0.906692496345587 -0.442289022607603 0.707662436172165 -0.0221144511303802 0.530746827129124 0.309602315825322 0.819024493650151 -0.703397506311306 -0.356516544294772 0.819024493650151 -0.466314599144313 1.03255375524812 0.0832704641329129 NA 0.752316616339279 0.207535618300491 -0.0518839045751228 -1.02639898181221 0 NA 0.674490759476595 0.927424794280318 -0.112415126579433 -0.112415126579433 -2.05157606007464 -1.77053824362606 NA NA NA NA NA NA NA NA NA -1.46139664553262 0.247313278474752 NA NA NA NA 1.62185641127256 -0.113157284696656 -0.983053910802199 0.113157284696656
[+] Show/hide bicluster #146 motif PSSM #1. bicluster 146 motif PSSM #1 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0.2 0 0.4 0.4
4 0.2 0 0 0.8
5 1 0 0 0
6 0.2 0.6 0.2 0
7 0.2 0.6 0 0.2
8 0 0.6 0.2 0.2
9 0.8 0 0 0.2
10 0.4 0.2 0.4 0
11 0 1 0 0
12 0.4 0 0.4 0.2
13 0.8 0 0 0.2
14 0 1 0 0
15 0 0 0.8 0.2
16 0.4 0.6 0 0
17 0 0.4 0.2 0.4
18 0 0.2 0.6 0.2
19 0 0.2 0 0.8
20 0 1 0 0
21 0 0.2 0.8 0 [+] Show/hide bicluster #146 motif PSSM #2. bicluster 146 motif PSSM #2 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 0.833333 0 0 0.166667
2 0 0.833333 0.166667 0
3 0 0.5 0 0.5
4 0 0 1 0
5 1 0 0 0
6 0 0 0.166667 0.833333
7 0 0.333333 0.666667 0
8 1 0 0 0 |