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[+] Show/hide bicluster #205 rows and columns.
bicluster 205
Mycobacterium tuberculosis H37Rv
15x25
[+] Show/hide bicluster #205 rows (genes).
bicluster 205 genes
Mycobacterium tuberculosis H37Rv
15
[+] Show/hide bicluster #205 rows (short gene names).
bicluster 205 short names
Mycobacterium tuberculosis H37Rv
15
short_name
[+] Show/hide bicluster #205 rows (long gene names).
bicluster 205 long names
Mycobacterium tuberculosis H37Rv
15
long_name
[+] Show/hide bicluster #205 rows (NCBI RefSeq gene IDs).
bicluster 205 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
30
[+] Show/hide bicluster #205 gene upstream sequences.
bicluster 205 upstream sequences
Mycobacterium tuberculosis H37Rv
15
upstream
[+] Show/hide bicluster #205 columns (arrays; conditions).
bicluster 205 arrays
Mycobacterium tuberculosis H37Rv
25
[+] Show/hide bicluster #205 ratios.
bicluster 205 ratios
Mycobacterium tuberculosis H37Rv
15x25
GENES 2885:::Strain.1006...replicate.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::WT.t.6h.WT.t.0h..2 4107:::X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050. 4107:::X0.12mg.mL.PZAvspH5.6..6h.A 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..4h.A 4107:::X1.2mg.mL.PZAvspH5.6..6h. 4107:::X100ug.mL.TriclosanvsEtOH..6h 4107:::X20ug.mL.chlorprmz.DMSO..6h..1 4107:::X20uM.DCCD.DMSO..6h..1 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..1 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..3 4107:::X7d.Dubos.NRP.1vsDubos.log.phase.A 4363:::H37Rv.hypoxia.4hr.rep.7 4364:::H37dosR.mutant.hypoxia.1.day.rep.4 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.2 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_01 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.2 4815:::H37Rv.reaeration.for.6hrs.rep.5
RV0795 0.49382359175965 3.7 2.25 -1.85829086794572 -2.68419792036604 0.867202405041337 1.58298851713895 0.564369819153886 1.74816992762301 2.90443980101146 1.14250475584811 -0.812141934879982 -1.96841180826843 -2.54654674496266 -2.32630486431724 -2.84937933085011 -1.72063969254233 NA NA 0.927424794280318 NA NA -0.919760126558994 NA NA
RV1370C 0.701470389855659 3.33029812491569 2.82443005530824 -2.72794040499423 -2.1583704303251 0.44966050631773 1.37895888604104 0.419683139229881 1.85859675944662 1.67873255691953 1.37895888604104 1.01923048098685 -2.39818936702789 -3.62726141762969 -2.57805356955499 -2.36821199994005 -2.03846096197371 NA NA 1.03767809150245 NA NA -1.34898151895319 NA NA
RV1757C 0.385423291129483 2.55212719801955 1.93232487850052 -1.88857412653447 -2.37420747335762 0.863348172130042 1.18710373667881 0.56657223796034 1.40294077971132 1.51085930122757 0.458653716444085 -0.674490759476595 NA NA -1.8615944961554 -0.701470389855659 NA NA NA 0.699017696184835 NA NA -0.645165074281961 NA NA
RV1763 0.53450211128334 2.73346255156304 2.69796303790638 -0.674490759476595 -1.47745594932968 1.41321873414144 0.931439620229584 0.289067468347112 1.60593037970618 1.54169316451793 0.385423291129483 -0.770846582258966 -1.89499784805329 -2.7300816455005 -1.95923506324154 -1.34898151895319 -1.95923506324154 NA NA 0.596664902613911 NA NA -1.04239481010019 NA NA
RV1764 0.674490759476596 1.90083759488859 2.35049810120632 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.425 NA NA -1.43695857453709 NA NA
RV2168C 0.521197405050096 1.38448103260985 1.17148395066988 -2.14610696197099 -2.17676563285628 0.797125443017794 1.47161620249439 0.490538734164796 1.83952025311799 1.28766417718259 1.13437082275609 -0.337245379738298 -1.87017892400329 -5.02802202518916 -2.11544829108569 -2.51401101259458 -1.47161620249439 NA NA 1.18035882908404 NA NA -0.972521560175556 NA NA
RV2305 1.09108799327096 2.07165018982097 0.0481779113911854 -1.05991405060608 NA 0.867202405041337 0.770846582258966 0.224830253158865 0.385423291129483 2.05559088602391 1.15626987338845 -0.44966050631773 -0.995676835417831 -3.75787708851246 -2.76220025309463 -1.31686291135907 -0.867202405041337 NA NA 1.3 NA NA -0.425994163879955 1.68622689869149 NA
RV2480C 0.649276151645694 3.54107648725213 2.23425064076622 -1.45274932810344 -2.04941423071735 0.804200520914402 1.32303956666563 0.337245379738298 1.37492347124075 1.89376251699198 1.34898151895319 -0.95985223463977 -1.68622689869149 -3.63187332025859 -1.81593666012929 -1.86782056470442 -1.34898151895319 NA NA 0.89932101263546 NA NA -1.07305348098549 NA NA
RV2815C 0.490538734164797 2.6 2.4 -1.99135367083566 -2.21618392399453 0.995676835417831 1.25262569617082 0.321186075941236 1.41321873414144 1.86287924045917 1.38110012654731 -0.770846582258966 -2.1840653164004 -4.46448645558318 -2.69796303790638 -3.30821658219473 -2.3125397467769 -0.967747611422941 -0.764422860740141 1.06794370250461 NA NA -1.41321873414144 NA NA
RV3184 0.545332954470439 1.91105715185035 1.98600056956997 -1.23167877817465 -2.40470618596003 1.11437603739611 0.997073296617575 0.293256851946346 1.34898151895319 1.20235309298002 0.410559592724884 -0.586513703892691 -1.75954111167807 -4.42817846438982 -1.96482090804052 -2.43403187115467 -1.96482090804052 NA NA 0.809388911371914 NA NA -1.34898151895319 NA NA
RV3186 0.674490759476595 1.88147422380313 1.02948589604322 -2.15263008343594 -2.32484049011082 0.975858971157627 1.1480693778325 0.258315610012313 1.54989366007388 1.20547284672413 0.574034688916251 -0.602736423362064 -1.43508672229063 -2.98498038236451 -2.00912141120688 -1.98041967676107 -1.836911004532 -0.763574444690485 -0.372132832814673 0.861052033374377 NA NA -0.821119185449768 NA NA
RV3325 0.315719078903938 2.3185619857008 3.24598677998111 -2.12724008758003 -1.99753032614222 0.907968330064647 0.648548807189034 0.233477570588052 1.32303956666563 1.66028494640393 0.804200520914402 -0.596664902613911 -1.03767809150245 -2.69796303790638 -1.84187861241686 -1.73811080326661 -1.24521370980294 NA NA 0.850444870644402 NA NA -0.830142473201963 NA NA
RV3381C 0.491295738384186 1.98492994931684 2.02347227842979 -2.3125397467769 -2.14391705690775 0.915380316432522 0.602223892389817 0.168622689869149 1.18035882908404 1.71031585438708 0.192711645564741 -0.602223892389817 -1.01173613921489 -2.72205199360197 -1.90302749995182 -1.39715943034438 -1.68622689869149 NA NA 0.674490759476595 -0.107918521516255 -2.72494266828544 -0.674490759476595 1.425 NA
RV3480C 0.119027781084105 2.45556792121948 2.5609571023877 -3.06331219928954 NA 0.955528575925176 1.32087773730833 0.140518908224291 3.48486892396241 0.730698322766311 0.421556724672872 0.0281037816448582 -1.79864202527092 -1.65812311704663 NA NA 0.0562075632897163 -0.588568369734354 -0.579640496425199 1.23656639237376 NA NA NA NA NA
RV3786C NA 1.28766417718259 2.26874164551218 -2.81937137461217 NA NA 1.25455281262647 -0.391204640496425 0.364225010117361 2.06394172399838 1.06569539997302 -0.49912316201268 -2.06394172399838 -2.92728989612842 NA NA -0.310265749359234 NA NA -0.0830142473201964 NA NA -0.970857911367827 NA 2.23041830690556
[+] Show/hide bicluster #205 motif PSSM #1. bicluster 205 motif PSSM #1 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 1 0 0 0
2 0 0 1 0
3 1 0 0 0
4 0 1 0 0
5 0 0 0 1
6 0 1 0 0
7 0 1 0 0
8 1 0 0 0
9 0 0 1 0
10 0 0 0 1
11 0 0 0 1
12 0 1 0 0
13 0 0 0 1
14 0 0 0 1
15 0 0 1 0
16 0 0 1 0
17 1 0 0 0
18 1 0 0 0
19 1 0 0 0
20 0 0 1 0
21 0 0 1 0
22 1 0 0 0
23 0 0 0 1
24 0 0 1 0 [+] Show/hide bicluster #205 motif PSSM #2. bicluster 205 motif PSSM #2 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0 0 0 1
2 0 0 1 0
3 1 0 0 0
4 1 0 0 0
5 0 1 0 0
6 0 1 0 0
7 0 0 1 0
8 0 1 0 0
9 0 1 0 0
10 0 1 0 0
11 0 1 0 0
12 0 0 1 0
13 0 0 1 0
14 0 1 0 0
15 1 0 0 0
16 0 0 0 1
17 0 0 1 0
18 0 0 0 1
19 0 1 0 0
20 0 1 0 0
21 0 0 1 0 |