Bicluster 260 (zzz

GENES 2867:::H37Ra..7H9.roll.replicate.4 2867:::H37Ra..Dubos.media.replicate.4 2867:::H37Rv..7H9.shake.replicate.2 2867:::H37Rv..Sauton.s.media.replicate.3 2867:::H37Rv..Sauton.s.media.replicate.4 2885:::Strain.1254...replicate.4 2885:::Strain.3160..replicate.2 2885:::Strain.9800608...replicate.3 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4084:::High.iron.wt.vs.high.iron.ideR.Complement.1a 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1 4099:::H37Rv.hypoxia.2hr.rep.3 4099:::H37Rv.hypoxia.2hr.rep.4 4099:::H37Rv.hypoxia.2hr.rep.5 4099:::H37Rv.hypoxia.2hr.rep.6 4101:::H37Rv.Day.0.rep.1 4101:::H37Rv.Day.0.rep.2 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.1 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4 4101:::H37Rv.Day60.3 4101:::NRP.Day14..3 4101:::NRP.Day6..1 4107:::DIPED..100ug.mL..DMSO..12h..1 4107:::H2O2.4mM.vs.ctrl.12h.1 4107:::H2O2.4mM.vs.ctrl.8h.1 4107:::Palmitate.Glucose..1 4107:::pH4.8vspH6.8..2h. 4107:::pH4.8vspH6.8..2h.B 4107:::X0.12mg.mL.BZA.pH5.6..2h. 4107:::X0.12mg.mL.BZA.pH5.6..4h..2 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.Nam.pH5.6..2h..2 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.PZAvspH5.6..4h. 4107:::X0.12mg.mL.PZAvspH5.6..4h.A 4107:::X0.1mM.GSNOvsDMSO..6h 4107:::X0.1ug.mL.Mtmvsctrl..1.5h. 4107:::X0.2ug.mL.Mtm.ctrl..4h...2 4107:::X0.2ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.5mM.DNP.DMSO..6h 4107:::X0.5ug.mL..111891vsDMSO.6hA 4107:::X0.5ug.mL..124196vsDMSO..6h 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..10.5h. 4107:::X1.2mg.mL.PZAvspH5.6..7h.A 4107:::X100ug.mL.Ceph.DMSO..6h 4107:::X100ug.mL.TriclosanvsEtOH..6h 4107:::X100ug.mLCephalexinvsEtOH.6h 4107:::X100uM.DCCD.DMSO..6h 4107:::X10mM.succinatevs10mM.glucose 4107:::X10ug.mL.EMBvsDMSO..6h 4107:::X10ug.mL.TriclosanvsDMSO..6hB 4107:::X10ug.mLchlorpromazinevsctrl.6h 4107:::X1ug.mL..109vsDMSO..6h 4107:::X1ug.mL..109vsDMSO..6hA 4107:::X1ug.mL..241vsDMSO..6hA 4107:::X20mJ.UVvsctrl..6h. 4107:::X20ug.mL.Cephalexin.Ctrl..6h..1 4107:::X20ug.mL.Cephalexin.Ctrl..6h..2 4107:::X20ug.mL.ethambutol.DMSO 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X20ug.mLProcept6778vsDMSO.6hB 4107:::X20uM.DCCD.DMSO..6h..1 4107:::X25J.UV.ctrl..2h. 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X2mM.DTNBvsDMSO 4107:::X2ug.mL.SMvsEtOH..6hA 4107:::X4mM.H2O2.ctrl..2h...2 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X50ug.mLAntimycinAvsDMSO..6hA 4107:::X50uM.CCCP.DMSO..6h..1 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X5ug.mLProcept.6778vsDMSO.6hA 4363:::H37Rv.hypoxia.1.day.rep.2 4363:::H37Rv.hypoxia.4.day.rep.7 4363:::H37Rv.hypoxia.4hr.rep.4 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.1 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.3 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5 4570:::MTB.strain.TB294.SigA.overexpression.vs.Ctrl..DS..rep2 4575:::Extracted.Lung.Surfactant.2hrs.rep.1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep2 4575:::Whole.Lung.Surfactant.2hrs.rep.2 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.2 4615:::AA_30uM_10min_03 4615:::AA_30uM_1h_02 4615:::AA_30uM_24.AA_30uM_1h_01 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_2h_08 4615:::AA_30uM_30min_01 4615:::AA_30uM_30min_07 4615:::AA_30uM_4h_05 4615:::AA_3uM_10.min_01 4615:::AA_60uM_2h_T0_01 4615:::Acetate.3mM.2h.03 4615:::Acetate.3mM.2h.05 4615:::Acetate.3mM.2h.06 4615:::C2_ceramide_5uM_1h_01 4615:::CK_LA_2h 4615:::CK_LA_2h.3 4615:::CK.4h.for.AA.NA.0.03mM 4615:::CK.4h.for.OA.NA.0.05mM 4615:::CK.for.MDG.24h.PA.NA 4615:::CK.for.MDG.OA.4h 4615:::CK.MDG.2h.for.PA.NA 4615:::CK.MDG.2h.for.PA.NA.2 4615:::CK.MDG.AA.Na.2h 4615:::ETYA_30uM_10min.05 4615:::L2A_30uM_1h_03 4615:::L2A_30uM_30min_05 4615:::L2A_30uM_4h_06 4615:::L2A_30uM_4h_08 4615:::LAA_50uM_10min_02 4615:::MTB1254_FA5_10min_01 4615:::MTB1254_FA5_1h_01 4615:::MTB1254.0485.1._Act_2h_01 4615:::MTB1254.3219.3._01 4615:::MTB1254.3524.1._PA_12h_01 4615:::MTB1254.B4.1._OA_30MIN_01 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_30MIN_01 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_01 4615:::MTB1254.whiB4_SDS_90MIN_01 4615:::OA_100uM_2h_T0_01 4615:::OA_50uM_10min_04 4615:::OA_50uM_10min_08 4615:::OA_50uM_1h_07 4615:::OA_50uM_2h_09 4615:::OA_50uM_4h_01 4615:::OA_50uM_4h_03 4615:::OA_50uM_4h_05 4615:::PA_100uM_24h_T0_01 4615:::PA_100uM_2h_04 4615:::PA_50uM_10min_10 4615:::PA_50uM_1h_11 4615:::PA_50uM_24h_03 4615:::PA_50uM_24h_T0 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_2h_02 4615:::PA_50uM_2h_05 4615:::PA_50uM_2h_T0_02 4615:::PA_50uM_30min_02 4615:::PA_50uM_30min_03 4615:::PA_50uM_3d_01 4615:::PA_50uM.AA_30uM_2h_02 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.AA_30uM_30min_02 4615:::PA_50uM.OA_10uM_24h_02 4615:::PA_50uM.OA_10uM_30min_01 4615:::PA_50uM.OA_10uM_30min_02 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_10uM_4h_04 4615:::PA_50uM.OA_30uM_2h_03 4615:::PA_50uM.OA_30uM_2h_04 4615:::Rv_OA30_30mim_03 4615:::Rv.MT71_100503_01 4615:::Starvation_1254_24h_07 4615:::Starvation_1254_6h_02 4615:::Starvation_1254_6h_04 4615:::Starvation_1254_OA50_24h_02 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_OA50_6h_03 4615:::Starvation_1254_PA50_24h_03 4615:::Starvation_OA50_24h_01 4615:::TBD042 4615:::TBD044 4615:::TBD045 4615:::TBD097 4615:::TBD1116 4615:::TBD1266 4615:::TBD1276 4615:::TBD425 4615:::TBE055 4615:::TBE058 4615:::Test_261B4.1 4615:::Tet_20uM_30M_01 4615:::WM_1254_20d_01 4615:::WM_1254_vs_1254whiB4_20day 4615:::WM_1254.whiB4._20d_01 4615:::WM_T0_01 4615:::X2.2..Dipyridyl_1mM.Dpd.AA_50uM_01 4615:::X2.BA_500uM_30min_01 4615:::X7H9_PA_50uM_4h_T0_02 4615:::X7h9.control.4h 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.rep.1 4638:::CDC1551.wild.type.vs.kstR.null.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.2 4815:::H37Rv.reaeration.for.24hrs.rep.1 4815:::H37Rv.reaeration.for.4hrs.rep.8 4815:::H37Rv.reaeration.for.6hrs.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.48hrs RV0094C 0.93602799274303 -0.908497757662353 -0.660725641936256 1.01861869798506 0.385423291129483 0.404694455685958 -1.04546067718872 -0.404694455685957 -0.779879940644813 -0.653412923242952 -1.79161607985971 -1.91808309726157 0.400478888439228 0.105389181168218 -0.23185619857008 0.653412923242952 0.484790233373803 -0.948502630513962 -0.238882143981294 0.238882143981294 1.05141206624293 -1.29429307899563 0.273442199787809 0.893244519306842 -0.25 0 0.8 0.9 -0.131965583375856 -0.747804972463182 -1.33431867635587 -0.601176546490009 3.44576801036956 0.307919694543663 -1.04106182440953 -0.311303427450736 -0.103767809150246 -0.57072295032635 0.441013188888543 1.29709761437807 0.57072295032635 2.41260156274321 0.856084425489525 0.129709761437807 1.78999470784173 0.933910282352209 0.700432711764156 -0.129709761437807 -0.233477570588052 -0.337245379738298 0.0259419522875612 -0.441013188888543 0 0.95985223463977 0.544780998038788 -1.19332980522782 -0.700432711764157 -1.34898151895319 0.596664902613911 -0.622606854901472 0.207535618300491 -0.752316616339279 0.596664902613911 -1.08956199607758 3.47622160653322 -1.37492347124075 -0.700432711764157 -0.596664902613911 -1.01173613921489 -0.907968330064647 -0.778258568626841 -1.03767809150245 -0.596664902613911 -1.16738785294026 -1.03767809150245 -1.99753032614222 -1.16738785294026 -1.21927175751538 -0.492897093463666 1.66028494640393 -1.19332980522782 -0.778258568626841 0.0259419522875612 -0.804200520914402 0.596664902613911 1.1414459006527 -0.0259419522875614 1.21927175751538 -1.08956199607758 -1.11550394836514 NA NA NA NA -0.160593037970618 NA 1.01173613921489 -1.19667715391009 0.19581989791256 0.369882029390391 0.718006292346053 0.45 -0.15 -0.1 -0.45 NA -1.15156958935028 1.11044210401635 0.625137777075869 -1.25850105121853 -1.18838848098257 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.502802202518916 -1.64007753093783 0.773889397715251 -0.810751518966816 1.69644645565325 -0.0204391139235332 0.538229999986374 -1.69644645565325 -1.58564494333094 0.89932101263546 -0.106794370250461 -1.18597958541301 -1.02859840820181 -2.36633841449705 1.75600180484424 0.523311796145634 0.325 0.199497266887444 -0.598491800662331 0.94048711532652 0.00822549706678775 NA NA NA -0.225177504839787 -0.892751766629568 1.39394756958496 0.764422860740141 -0.134898151895319 RV0116C -0.101173613921489 -1.31525698097936 -0.101173613921489 1.98974774045596 2.19209496829893 0.73189422836822 -0.904104635043096 0.416175149464282 -0.415071236600982 -0.674490759476595 -0.972823210783551 -1.45274932810344 -0.661519783332815 -0.259419522875614 1.37492347124075 1.55651713725368 0.674490759476595 1.01173613921489 -0.39539113486559 0.39539113486559 2.325 -2.16302209073529 -0.674490759476595 -0.627974155374761 -1.13598443701321 NA 0.496993191193281 0.780989300446584 -0.829291917389256 -1.12783700764939 -1.41532487234433 -1.06149365425825 0.641319082781025 0.176915609043041 -1.07255087982344 -0.0782018271856922 -1.23167877817465 -0.625614617485538 NA 1.23167877817465 -1.17302740778538 1.66178882769596 1.62268791410311 1.7790915684745 1.25122923497108 1.25122923497108 1.40763288934246 0.684265987874807 1.05572466700684 -0.723366901467653 -0.117302740778538 -0.840669642246191 -0.293256851946346 -0.508311876706999 NA -0.997073296617575 -0.938421926228306 0.0195504567964231 0.860220099042614 0.0195504567964231 0.645165074281961 NA 2.38515572916361 0.332357765539192 NA -1.34898151895319 -0.410559592724884 -0.312807308742769 0.136853197574961 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