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[+] Show/hide bicluster #381 rows and columns.
bicluster 381
Mycobacterium tuberculosis H37Rv
15x232
[+] Show/hide bicluster #381 rows (genes).
bicluster 381 genes
Mycobacterium tuberculosis H37Rv
15
[+] Show/hide bicluster #381 rows (short gene names).
bicluster 381 short names
Mycobacterium tuberculosis H37Rv
15
short_name
[+] Show/hide bicluster #381 rows (long gene names).
bicluster 381 long names
Mycobacterium tuberculosis H37Rv
15
long_name
[+] Show/hide bicluster #381 rows (NCBI RefSeq gene IDs).
bicluster 381 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
28
[+] Show/hide bicluster #381 gene upstream sequences.
bicluster 381 upstream sequences
Mycobacterium tuberculosis H37Rv
15
upstream
[+] Show/hide bicluster #381 columns (arrays; conditions).
bicluster 381 arrays
Mycobacterium tuberculosis H37Rv
232
[+] Show/hide bicluster #381 ratios.
bicluster 381 ratios
Mycobacterium tuberculosis H37Rv
15x232
GENES 2867:::H37Rv..Sauton.s.media.replicate.1 2885:::Strain.1006...replicate.3 2885:::Strain.1006...replicate.4 2885:::Strain.3160..replicate.1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.1 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB1254.Day.0.rep.1 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4084:::High.iron.wt.vs.high.iron.ideR.KO.1a 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.5 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6 4101:::H37Rv.Day6.2 4101:::H37Rv.Day60.1 4101:::H37Rv.Day60.2 4101:::H37Rv.Day8.2 4101:::NRP.Day14..2 4101:::NRP.Day6..1 4101:::NRP.Day6..3 4107:::Palmitate.Glucose..1 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::PBS.Tween.7H9 4107:::Succinate.7H9.based.medium..1 4107:::Succinate.7H9.based.medium..2 4107:::UV.20J.vs.ctrl.8h.1 4107:::UV.40J.vs.ctrl.12h.1 4107:::WT.t.6h.WT.t.0h..2 4107:::X0.05mM.Palmitate.10mM.Gluc..1 4107:::X0.12mg.mL.NamvspH5.6..7h. 4107:::X0.1mg.mLTriclosanvsEtOH.6hB 4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA 4107:::X0.2mg.mL.AmpvsEtOH..6h 4107:::X0.4mM.NaN3.DMSO 4107:::X0.5mM.DNP.DMSO..6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X0.5uMValinomycinvsDMSO.6h 4107:::X100ug.mLCephalexinvsEtOH.6hA 4107:::X100uM.DCCD.DMSO..6h 4107:::X10ug.mL.ChlorprovsEtOH 4107:::X10ug.mL.ChlorprovsEtOH..6h 4107:::X10ug.mL.EconazolevsEtOH..6h 4107:::X10ug.mL.EMBvsDMSO..6hA 4107:::X10ug.mL.OfloxvsDMSO..6hA 4107:::X10ug.mL.TRZ.DMSO..6h..1 4107:::X10ug.mL.TRZ.DMSO..6h..2 4107:::X10uM.ValinomycinvsDMSO..6h 4107:::X12ug.mLEthionamidevsEtOH.6h 4107:::X12ug.mLEthionamidevsEtOH.6hA 4107:::X1ug.mL..111895vsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X2.5mM.Dinitrophenol.DMSO..6h 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X20ug.mL.chlorprmz.DMSO..6h..1 4107:::X20ug.mL.chlorprmz.DMSO..6h..2 4107:::X20ug.mL.KCN.DMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X20uM.DCCD.DMSO..6h..2 4107:::X24ug.mL.Econazole.DMSO..6h..1 4107:::X25J.UV.ctrl..2h. 4107:::X25ug.mL.CPZvsDMSO..6h.A 4107:::X25ug.mL.TRZ.DMSO..6h 4107:::X2ug.mL..111895vsDMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X40ug.mL.5CL.pH5.6..2h..2 4107:::X40ug.mL.5CL.pH5.6..4h..3 4107:::X4d.Dubos.NRP.1vsDubos.aero.A 4107:::X50ug.mL.Thioridazine.DMSO..6h 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2 4107:::X5ug.mL.OfloxvsEtOH..6h 4107:::X5ug.mL.OfloxvsEtOH..6hA 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X9ug.mLAscidideminNpvsDMSO.6h 4107:::X9ug.mLAscidideminNpvsDMSO.6hA 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.1.day.rep.7 4363:::H37Rv.hypoxia.1.day.rep.9 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4.day.rep.4 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4.day.rep.7 4363:::H37Rv.hypoxia.4hr.rep.2 4363:::H37Rv.hypoxia.4hr.rep.5 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.7 4363:::H37Rv.hypoxia.8hr.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4364:::H37dosR.mutant.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.6 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.6 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.2 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5 4575:::Extracted.Lung.Surfactant.30min.rep.1 4575:::Whole.Lung.Surfactant.2hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.3 4615:::AA_30uM_24.AA_30uM_1h_01 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_2h_08 4615:::AA_30uM_4h_08 4615:::AA_30uM_4h_09 4615:::Acetate.3mM.60m.03 4615:::C2_ceramide_25uM_1h_01 4615:::ETYA_30uM_10min.01 4615:::L2A_30uM_2h_02 4615:::L2A_30uM_2h_03 4615:::L2A_30uM_4h_03 4615:::L2A_30uM_4h_07 4615:::MAPP_5uM_30m_01 4615:::MDG.MD.glycerol 4615:::MDGCy3.7H9Cy5.02 4615:::MTB1254_Bottom_21D_02 4615:::MTB1254_Bottom_21D_03 4615:::MTB1254_Bottom_42D_03 4615:::MTB1254_Bottom_42D_04 4615:::MTB1254_Pellicle_21D_03 4615:::MTB1254_Pellicle_42D_04 4615:::MTB1254.3219.1._01 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB1254whiB4_SDS_90MIN_01 4615:::MTB1254whiB4_SDS_90MIN_02 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::OA_50uM_24h_05 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h..0.5.BSA.10mMGlu._30min_01 4615:::OA_50uM_30min_06 4615:::OA_50uM_4h_06 4615:::OA_50uM_4h_08 4615:::OA_50uM_4h_09 4615:::OA_50uM.0.5.BSA_4h_01 4615:::PA_300uM_2h_T0_01 4615:::PA_300uM_4h_T0_01 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_2h_02 4615:::Rv.MT106_100503_01 4615:::Rv.MT71_100703_01 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_3d_04 4615:::Starvation_1254_6h_03 4615:::Starvation_1254_6h_06 4615:::Starvation_1254_6h_08 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_OA50_5d_02 4615:::Starvation_1254_PA50.OA30_24h_01 4615:::Starvation_1254_PA50.OA30_24h_02 4615:::TBD425 4615:::WT_85.1_OA_10min_01 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4731:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4815:::H37Rv.reaeration.for.6hrs.rep.3 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs
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RV2463 -1.06498540969989 -2.30120376762603 -1.34898151895319 -0.119027781084105 0.694929873400128 0.651232457425678 0.372132832814673 0 0.441907738967424 0.372132832814673 0.674490759476595 -2.13976378868437 -0.9535903840876 -1.27920661280044 0 -0.790782269731181 -1.23269000869861 -0.860557175883932 -0.744265665629346 -1.65133944561511 -1.44201472715686 NA -1.16291510254585 -1.9071807681752 1.04662359229127 1.25594831074952 0.930332082036683 0.441907738967424 0.651232457425678 -1.81414755997153 -1.81414755997153 1.39549812305502 1.31150981009338 -0.374717088598108 0.337245379738298 -0.157859539451969 1.67905146508003 1.1337185106096 1.93736707509235 1.67905146508003 -0.875402900597283 1.44943758951353 1.93736707509235 0.35 -0.363187332025859 -0.0518839045751228 -0.726374664051718 0.38912928431342 -3.06115036993224 -3.45027965424566 0.441013188888543 -1.37492347124075 0.674490759476595 0.804200520914402 -1.73021542648344 -0.263931166751711 -3.87099044569176 -1.37830720414783 -0.850444870644403 -0.381233907530249 -0.791793500255134 1.02639898181221 -1.55426131531563 0.175954111167807 0.791793500255133 -0.557188018698057 0.645165074281961 -4.34020140880592 -4.48682983477909 0.0293256851946344 0.586513703892691 -1.6129126857049 -0.0293256851946346 -5.95311409451082 -1.96482090804052 -1.49560994492636 -0.909096241033672 0.263931166751711 1.02639898181221 0.351908222335615 -0.205279796362442 -2.34605481557077 0.674490759476595 1.17302740778538 -0.850444870644403 -1.90616953765125 -2.40470618596004 -0.70381644467123 -1.40763288934246 -0.32258253714098 -0.205279796362442 -4.78008668672544 1.11437603739611 -3.63638496413469 0.0293256851946344 0.557188018698057 -0.762467815060499 -4.19357298283274 -2.25807775998686 -1.84751816726198 0.586513703892691 -0.117302740778538 -0.32258253714098 -1.67156405609417 -6.15839389087326 -1.34898151895319 0.791793500255133 1.05572466700684 0.234605481557077 -1.08505035220148 -0.293256851946346 0.514742948021612 -0.496993191193281 0.470368555950783 0.88305040220949 -0.869738084588241 -1.32679432291778 NA 0.212997081939977 -0.199684764318729 -0.931862233487401 -0.940737111901567 -0.989548943179478 0.674490759476595 -1.8058946140825 -1.9581989791256 -1.92918862387929 1.70435837072043 0.681743348288171 0.493176039187188 NA -0.893700256306489 -0.893700256306489 1.73681370565223 -0.674490759476595 -0.46250794935538 -0.944287063267233 -1.50315083540498 -0.578134936694225 -0.732304253146018 0.0578134936694225 -0.269796303790638 -0.250525139234164 -0.250525139234164 1.15626987338845 0.770846582258966 0.0963558227823706 0.0770846582258967 1.09845637971903 -2.25254461183693 1.2598978337393 0.0749434177196217 0.0275302350806774 0.474641645557604 0.849358734155712 1.1491324050342 0.249811392398739 0.299773670878487 0.499622784797478 -1.92354772147029 0.999245569594956 0.724453037956343 2.92279329106525 0.174867974679117 0.649509620236721 0.199849113918991 NA 2.62301962018676 -4.0219634176197 -3.52234063282222 -3.14762354422411 -4.09690683533932 -1.29901924047344 -3.77215202522096 0.274792531638613 0.0749434177196217 -0.324754810118361 0.374717088598108 -0.89932101263546 -0.5745662025171 -0.974264430355082 -1.19909468351395 NA 0.274792531638613 1.1491324050342 2.2982648100684 0.674490759476595 0.974264430355082 1.17411354427407 0.874339873395586 -1.17411354427407 -1.6237740505918 0.0249811392398739 0.924302151875334 0.599547341756974 0.374717088598108 -3.72218974674121 -4.17185025305894 -4.92128443025516 -5.02120898721465 -3.87207658218045 -2.54807620246714 -2.67298189866651 -3.54732177206209 -5.89554886061024 -2.34822708854815 -3.72218974674121 0.0999245569594956 0.0499622784797478 -0.126467017401862 0.080296518985309 -0.215263008343594 0.817999431705658 1.07631504171797 -0.38747341501847 -0.152714888938097 0.738121963200802 1.11990918554604 0.531416962011863 -0.949793110283369 -1.0323838155254 1.83076063286504 0.660725641936256 1.40404198911455 0 -0.660725641936256 -0.0550604701613548 -0.674490759476595 0.936233442258558 NA -0.36904703003051 0
[+] Show/hide bicluster #381 motif PSSM #1. bicluster 381 motif PSSM #1 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0 0.25 0.125 0.625
2 0.5 0 0 0.5
3 0 0.25 0.125 0.625
4 0 0 0.875 0.125
5 0 0 0 1
6 0.25 0.75 0 0
7 0 0 1 0
8 0 0.125 0 0.875
9 0 0.875 0 0.125
10 0 0 1 0
11 0.875 0 0 0.125 [+] Show/hide bicluster #381 motif PSSM #2. bicluster 381 motif PSSM #2 Mycobacterium tuberculosis H37Rv 14x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0 0 0 1
4 1 0 0 0
5 0 0 0 1
6 0 0 0.666667 0.333333
7 0 0 0.333333 0.666667
8 0.333333 0.333333 0 0.333333
9 0 1 0 0
10 0 0 0 1
11 0 0 1 0
12 0 0 1 0
13 0 1 0 0
14 0 1 0 0 |