Bicluster 463 (zzz

GENES 2867:::H37Ra..Youman.media.replicate.3 2867:::H37Rv..7H9.shake.replicate.2 2867:::H37Rv..7H9.shake.replicate.3 2867:::H37Rv..Youman.media.replicate.1 2885:::H37Ra..7H9.roll.replicate.3 2885:::H37Rv..7H9.roll.replicate.3 2885:::Strain.1006...replicate.3 2885:::Strain.1006...replicate.4 2885:::Strain.3160...replicate.3 2885:::Strain.3160..replicate.4 2885:::Strain.9802501..replicate1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.1 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.1 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.2 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.5 4082:::H37Rv.wild.type.Vs.Rv3676.null.6 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.5 4082:::Rv3676.null.Vs.H37Rv.wild.type.6 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3a 4084:::High.iron.wt.vs.high.iron.ideR.KO.1b 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.5 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.6 4101:::NRP.Day12..2 4101:::NRP.Day14..2 4101:::NRP.Day8..2 4107:::DIPED.10ug.mL.vs.DMSO.12h.1 4107:::DIPED.5ug.mL.vs.DMSO.12h.1 4107:::pH4.8vspH6.8..2h.A 4107:::pH4.8vspH6.8..5h. 4107:::pH4.8vspH6.8..7h. 4107:::pH5.2vspH6.8..10.5h. 4107:::pH5.2vspH6.8..2h. 4107:::pH5.2vspH6.8..5.5h. 4107:::pH5.6vspH6.8..4h.B 4107:::UV.40J.vs.8h.2 4107:::UV.40J.vs.ctrl.8h.1 4107:::X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050. 4107:::X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046. 4107:::X.241..10ug.mL..DMSO..12h..1 4107:::X0.02mM.GSNOvsDMSO..6h 4107:::X0.12mg.mL.BZA.pH5.6..4h..1 4107:::X0.12mg.mL.BZA.pH5.6..4h..2 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.BZAvspH5.6..5h. 4107:::X0.12mg.mL.BZAvspH5.6..7h. 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.12mg.mL.PZAvspH5.6..11h. 4107:::X0.12mg.mL.PZAvspH5.6..4h.A 4107:::X0.12mg.mL.PZAvspH5.6..6h.A 4107:::X0.1mM.GSNOvsDMSO..6h 4107:::X0.1ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2mg.mL.TLMvsEtOH..6h 4107:::X0.2ug.mL.Mtmvsctrl..4h.B 4107:::X0.4ug.mL.PA824.DMSO..6h..3 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X10ug.mL.Amikacin.EtOH..6h 4107:::X10ug.mL.LevovsEtOH..6hA 4107:::X10ug.mL.OfloxvsDMSO..6h 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X2mMb.mercaptoethanolvsDMSO.6h 4107:::X40mJ.UV.ctrl..6h. 4107:::X40ug.mL.5CL.pH5.6..4h..1 4107:::X60J.UVvsctrl..6h. 4107:::X60ug.mL.ChlorprovsEtOH..6h 4363:::H37Rv.hypoxia.1.day.rep.5 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.5 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.1 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4575:::Extracted.Lung.Surfactant.2hrs.rep.2 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Purified.Surfactant.Lipids.2hrs.rep.2 4583:::X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection..DS..rep.1 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection..DS..rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.3 4615:::AA_30uM_10min_03 4615:::AA_30uM_1h_08 4615:::AA_30uM_24h_04 4615:::AA_30uM_2h_02 4615:::AA_30uM_2h_05 4615:::AA_30uM_30min_02 4615:::AA_30uM_4h_05 4615:::Acetate.3mM.30m.01 4615:::C2_ceramide_25uM_1h_01 4615:::CHP_25uM_24h_01 4615:::L2A_30uM_10min_02 4615:::L2A_30uM_2h_02 4615:::L2A_30uM_30min_01 4615:::L2A_30uM_30min_05 4615:::L2A_30uM_30Min_06 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.0485.1._OA_10m_02 4615:::MTB1254.0485.1._OA_10m_04 4615:::MTB1254.0485.1._PA_10m_01 4615:::MTB1254.0485.1._PA_10m_02 4615:::MTB1254.0485.1._PA_10m_04 4615:::MTB1254.0485.1._PA_30m_03 4615:::MTB1254.0485.1._PA_30m_04 4615:::MTB1254.0485.14._01 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254.3524.2._INH_20MIN 4615:::MTB1254.B4.1._PA_30MIN_01 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_4h_04 4615:::MTB1254.Rv3524.2.compl._PA50.OA30_2h_02 4615:::MTB1254.Rv3524.2.compl._PA50.OA30_30m_02 4615:::MTB1254TA1_OA.30min_03 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_04 4615:::OA_50uM_10min_05 4615:::OA_50uM_2h_04 4615:::OA_50uM_4h_02 4615:::OA_50uM_4h_05 4615:::PA_300uM_24h_T0_01 4615:::PA_5.uM_10min_02 4615:::PA_50uM_10min_01 4615:::PA_50uM_10min_10 4615:::PA_50uM_12h_05 4615:::PA_50uM_24h_08 4615:::PA_50uM_24h_T0 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_3d_06 4615:::PA_50uM_4h_05 4615:::PA_50uM.0.5.BSA_1h_01 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.OA_10uM_4h_01 4615:::PA_50uM.OA_30uM_24h_02 4615:::Rv_OA30_30mim_01 4615:::Rv_OA30_30mim_03 4615:::Rv.MT106_100503_01 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._OK 4615:::Spe_100uM_30M_01 4615:::Starvation_1254_OA50_24h_02 4615:::Starvation_1254_OA50_24h_04 4615:::Starvation_1254_OA50_5d_04 4615:::Starvation_1254_PA50_24h_04 4615:::Starvation_1254_PA50.OA30_24h_02 4615:::TBD043 4615:::TBD098 4615:::TBD1268 4615:::TBD622 4615:::Test_361.3 4615:::Test.4 4615:::Test.6 4615:::Tet_50ng_30M_01 4615:::WM_1254_14d_02 4615:::WM_1254_vs_1254whiB4_20day 4615:::WT_85.1_OA_10min_02 4615:::X2.BA_100uM_30min_01 4615:::X7H9_MTB1254.3524.1._OA100_10M_01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.3 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.2 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X10ug.ml.Ethambutol.vs.DMSO.12hrs.3 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.4 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.5 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.6 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.5 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.3 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.5 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2 Raghavan_Nature2008:::WT.TB.rep3 Rohde_CellHostMicrobe2007:::CDC1551.in.ctrl.vs.100.nM.Concanamycin.A.treated.macrophages.for.2.hr Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages...IFNg.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.48hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.4hrs RV0580C -0.38912928431342 -0.181593666012929 -0.648548807189034 1.21927175751538 0.854354962003687 -1.30401546832142 NA -0.157381177211206 -0.44966050631773 1.59629479742794 1.3264984936373 0.0275302350806774 -0.674490759476595 -0.0354995136566629 -0.485160019974393 -0.0354995136566629 -0.461493677536618 0.745489786789921 0.272162938034416 -0.272162938034416 -0.911154183854348 -0.934820526292123 1.59747811454983 1.69214348430093 2.99379231837857 -0.674490759476595 -0.319495622909966 -0.343161965347741 0.0118331712188876 -0.377257543436062 0.125752514478687 0.05 -0.65 NA NA -0.05 0.65 NA NA -0.149886835439243 -1.12415126579433 -0.246764912003632 -0.575784794675142 -0.411274853339387 -0.50998081814084 0.83900070081235 0.740294736010897 1.36543251308677 0.482482441085448 -0.964964882170895 0.797573014855536 1.03421916453078 1.6637438733756 -0.284784987334562 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.95602320248213 -0.438418993659787 -0.505868069607447 -1.44533734173556 NA NA -0.925015898710759 0.0963558227823707 0.404694455685957 -0.247313278474752 -0.741939835424255 -0.0224830253158865 -0.292279329106525 -1.13022775912294 -0.747408679420011 3.53651911725566 0.638031799504887 -0.820326599363426 -0.127606359900978 0.455736999646348 -0.182294799858539 0.437507519660494 -1.01173613921489 -0.112415126579432 0.730698322766311 -0.421556724672872 -2.30451009487837 -0.871217230990602 -0.562075632897163 1.79864202527092 0.562075632897163 NA 0.281037816448581 -0.702594541121453 -0.281037816448581 -1.32087773730833 0 -0.0281037816448582 -0.252934034803723 -0.224830253158865 -0.196726471514007 0.252934034803723 0.365349161383156 -0.421556724672872 -0.140518908224291 0.562075632897163 -0.0281037816448582 0.252934034803723 0.674490759476595 -0.168622689869149 -0.309141598093439 0.365349161383156 -0.786905886056028 -1.12415126579433 -0.337245379738298 0.75880210441117 -0.168622689869149 0.337245379738298 -0.618283196186879 -1.91105715185035 -0.0562075632897163 NA -0.730698322766311 -1.23656639237376 -2.72606681955124 -0.0843113449345743 -0.252934034803723 0.674490759476595 -0.927424794280318 0.89932101263546 1.79864202527092 -0.646386977831737 -0.674490759476595 0.337245379738298 0.871217230990602 -1.93916093349521 -1.46139664553262 0.702594541121453 0.618283196186879 0.618283196186879 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