GENES 4055:::H37Rv.Vs.M.bovis.rep3 4055:::H37Rv.Vs.M.bovis.rep4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.1 4084:::High.iron.wt.vs.high.iron.ideR.KO.2a 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.6 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3 4099:::H37Rv.hypoxia.2hr.rep.5 4099:::H37Rv.hypoxia.2hr.rep.6 4101:::NRP.Day14..2 4101:::NRP.Day14..7 4107:::pH4.8vspH6.8..2h.A 4107:::pH4.8vspH6.8..4h. 4107:::pH4.8vspH6.8..4h.C 4107:::pH5.2vspH6.8..2h. 4107:::pH5.6vspH6.8..11h. 4107:::pH5.6vspH6.8..2h.A 4107:::Rif.5ug.mL.vsDMSO.2.5h 4107:::X0.12mg.mL.BZA.pH5.6..2h. 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..2.5h. 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZAvspH5.6..4h. 4107:::X0.12mg.mL.PZAvspH5.6..4h.A 4107:::X0.1ug.mL.Mtmvsctrl..0.33h. 4107:::X0.1ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2ug.mL.Mtm.ctrl..4h...2 4107:::X0.2ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.5ug.mL..111891vsDMSO.6h 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X0.5ug.mL.CeruleninvsDMSO..6hB 4107:::X1.2mg.mL.NamvspH5.6..10.5h. 4107:::X1.2mg.mL.NamvspH5.6..5h. 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..10.5h. 4107:::X1.2mg.mL.PZAvspH5.6..16h. 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X1.2mg.mL.PZAvspH5.6..4h.A 4107:::X100ug.mLCephalexinvsEtOH.6h 4107:::X100uM.DipyridylvsCtrl..6hA 4107:::X10ug.mL..109.DMSO..6h 4107:::X130ug.mL.TLMvsDMSO..6hA 4107:::X150uM.Deferroxaminevsctrl..6hA 4107:::X20ug.mL.Cephalexin.Ctrl..6h..1 4107:::X20ug.mL.Cephalexin.Ctrl..6h..2 4107:::X20ug.mL.Prcp.6778.DMSO..6h..2 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..3 4107:::X2mM.ZnSO4.DMSO..6h 4107:::X40ug.mL.5CL.pH5.6..2h..1 4107:::X40ug.mL.5CL.pH5.6..4h..1 4107:::X4mM.H2O2.ctrl..2h...1 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..1 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X5ug.mLProcept.6778vsDMSO.6hA 4107:::X80ug.mL.5CL.pH5.6..2h. 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.3 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.5 4575:::Extracted.Lung.Surfactant.30min.rep.1 4575:::Extracted.Lung.Surfactant.30min.rep.4 4575:::Purified.Human.SP.A.Coated.2hrs.rep1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4575:::Purified.Surfactant.Lipids.30min.rep.2 4575:::Whole.Lung.Surfactant.2hrs.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.5 4583:::X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.2 4615:::AA_30uM_10.min_04 4615:::AA_30uM_10.min_05 4615:::AA_30uM_10min_03 4615:::AA_30uM_24h_T0_01 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_2h_01 4615:::AA_30uM_2h_03 4615:::AA_30uM_30min_01 4615:::AA_30uM_4h_08 4615:::AA_60uM_24h_01 4615:::AA_60uM_24h_03 4615:::Acetate.3mM.30m.01 4615:::Acetate.3mM.30m.03 4615:::Acetate.3mM.30m.05 4615:::Acetate.3mM.30m.07 4615:::Acetate.3mM.60m.01 4615:::Acetate.3mM.60m.02 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.4h.for.AA.NA.0.03mM 4615:::CK.AA.2h 4615:::CK.AA0.03.2h.02 4615:::CK.for.AA.NA.24h 4615:::CK.OA.Na.24h.1 4615:::ETYA_10uM_1h_02 4615:::ETYA_30uM_10min.01 4615:::Glucose_40mM_1h.OA_50uM_10min 4615:::L2A_30uM_10min_02 4615:::L2A_30uM_1h_05 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_1h_07 4615:::L2A_30uM_4h_04 4615:::L2A_30uM_4h_06 4615:::L2A_30uM_4h_07 4615:::L2A_30uM_4h_08 4615:::LAA_50uM_10min_01 4615:::LAA_50uM_10min_02 4615:::MDGCy3.7H9Cy5.01 4615:::MDGCy3.7H9Cy5.03 4615:::MTB1254_Bottom_10D_04 4615:::MTB1254_Bottom_14D_04 4615:::MTB1254_Bottom_21D_02 4615:::MTB1254_Bottom_21D_03 4615:::MTB1254_Bottom_21D_04 4615:::MTB1254_Bottom_42D_03 4615:::MTB1254_Bottom_42D_04 4615:::MTB1254_FA5_10min_01 4615:::MTB1254_FA5_1h_01 4615:::MTB1254_Pellicle_42D_02 4615:::MTB1254_Pellicle_56D_02 4615:::MTB1254_SDS_90MIN_01 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.3219.1._01 4615:::MTB1254.3219.2._01 4615:::MTB1254.3219.3._01 4615:::MTB1254.3524.1._PA_12h_01 4615:::MTB1254.3524.2._INH_20MIN 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::OA_50uM_10min_04 4615:::OA_50uM_10min.Glu_40mM_20min_01 4615:::OA_50uM_1h_03 4615:::OA_50uM_1h_05 4615:::OA_50uM_2h..0.5.BSA.10mMGlu._30min_01 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_30min_02 4615:::OA_50uM_30min_03 4615:::OA_50uM_4h_05 4615:::PA_25uM_2h_T0_01 4615:::PA_300uM_4h_T0_01 4615:::PA_50uM_10min_04 4615:::PA_50uM_10min_06 4615:::PA_50uM_10min_10 4615:::PA_50uM_12h_01 4615:::PA_50uM_12h_02 4615:::PA_50uM_24h_06 4615:::PA_50uM_30.min_04 4615:::PA_50uM_4h_03 4615:::PA_50uM_4h_05 4615:::PA_50uM_8h_03 4615:::PA_50uM_8h_05 4615:::PA_50uM.MAPP_30m_01 4615:::Rv.3524.1._01 4615:::Rv.MT106_100503_01 4615:::Rv.MT90_100503_01 4615:::Rv.MT90_100703_01 4615:::Rv.MT90_100803_01 4615:::Rv.MT90_100903_01 4615:::Rv.MT96_100503_01 4615:::Rv.p0485.2._300uM.PA_4h 4615:::Starvation_1254_24h_01 4615:::Starvation_1254_24h_07 4615:::Starvation_1254_24h_08 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_3d_03 4615:::Starvation_1254_6h_01 4615:::Starvation_1254_6h_07 4615:::Starvation_1254_6h_08 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_PA50.OA30_24h_01 4615:::Starvation_1254_PA50.OA30_6h_02 4615:::Starvation_1254_PA50.OA30_6h_03 4615:::Starvation_1254_PA50.OA30_6h_04 4615:::Starvation_OA50_24h_02 4615:::Strain95.OA.10M.01 4615:::TBD040 4615:::TBD099 4615:::TBD1113 4615:::TBD1114 4615:::TBD625 4615:::TBE285 4615:::Test.4 4615:::WM_1254_10d_01 4615:::WT_65.4_SDS_01 4615:::X7H9_PA_50uM_4h_T0_02 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.H37Rv.rep.3 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.1 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.5 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.6 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep2 Raghavan_Nature2008:::WT.TB.rep3 RV0201C 0.71836007716613 -0.707392747743746 -0.786905886056028 1.23656639237376 0.65 0.35 NA -1.37895888604104 0.659502075932671 0.539592607581276 0.44966050631773 -0.989253113899006 -1.46889098730459 1.1091625822504 0.209841569614941 -0.65 0 0.724453037956343 NA -0.843113449345744 -0.202347227842979 -0.202347227842979 0.269796303790638 -0.505868069607447 -0.607041683528936 0.236071765816808 0.0337245379738297 -0.134898151895319 NA -0.944287063267233 -1.9222986645083 -0.269796303790638 0.438418993659787 -0.168622689869149 -0.539592607581276 -0.404694455685957 -1.45015513287468 -0.404694455685957 -0.269796303790638 0.438418993659787 0.674490759476595 0.168622689869149 0.472143531633617 -0.269796303790638 0.269796303790638 0.0674490759476595 0.168622689869149 0.876837987319574 0.404694455685957 0.438418993659787 0.269796303790638 -0.134898151895319 -0.539592607581276 0.539592607581276 0.0674490759476595 -0.0337245379738298 -0.404694455685957 2.46189127208957 1.01173613921489 -0.370969917712127 1.61877782274383 -1.61877782274383 -1.38270605692702 NA 1.07918521516255 0.236071765816808 0.640766221502765 0.573317145555106 NA NA 0.45 1.45 -2.0665248800985 -1.69340233230294 1.57859539451969 0.172210406674876 -0.545332954470439 -0.487929485578813 0.344420813349751 0.660139892253689 -2.61185783456894 -0.0578134936694224 -0.674490759476595 -0.713033088589544 2.45862760712436 -0.175954111167807 0.293256851946346 -0.879770555839037 0.410559592724884 0.0879770555839037 0.733142129865864 -0.263931166751711 -0.146628425973173 0.498536648308788 -0.645165074281961 0.938421926228306 1.37830720414782 0.498536648308788 -0.0586513703892691 NA 1.02639898181221 0.70381644467123 NA 0.879770555839037 1.23167877817465 1.49560994492636 0.733142129865864 1.49560994492636 -0.146628425973173 0.527862333503422 1.6129126857049 -1.17302740778538 -0.498536648308788 -0.175954111167807 0.293256851946346 0.674490759476595 0.351908222335615 -0.0586513703892691 0.351908222335615 -1.08505035220148 -0.879770555839037 1.17302740778538 1.23167877817465 -0.410559592724884 -1.23167877817465 -1.46628425973173 -0.645165074281961 -1.67156405609417 -1.7008897412888 -0.850444870644403 NA -0.469210963114153 -2.84459146387955 -2.87391714907419 -0.733142129865864 0.498536648308788 0.205279796362442 -0.234605481557077 0.0879770555839037 2.08212364881905 0.733142129865864 1.17302740778538 -0.938421926228306 -1.37830720414782 1.6129126857049 1.23167877817465 -0.205279796362442 1.43695857453709 1.20235309298002 0.557188018698057 -0.117302740778538 -0.439885277919519 -0.263931166751711 -0.762467815060499 -0.117302740778538 0.469210963114153 -2.19942638959759 0.645165074281961 1.40763288934246 6.01176546490009 -1.29033014856392 1.02639898181221 2.14077501920832 0 0.557188018698057 -0.879770555839037 0.263931166751711 1.05572466700684 0.879770555839037 1.05572466700684 3.57773359374542 3.25515105660444 1.05572466700684 1.11437603739611 -1.90616953765125 0.146628425973173 -1.05572466700684 -2.63931166751711 -2.4633575563493 -2.55133461193321 -2.49268324154394 -0.733142129865864 -1.55426131531563 -1.05572466700684 -0.645165074281961 0.70381644467123 -0.879770555839037 -1.20235309298002 -0.498536648308788 1.08505035220148 1.23167877817465 1.524935630121 -0.410559592724884 -1.40763288934246 -0.32258253714098 -0.234605481557077 -0.351908222335615 1.08505035220148 1.08505035220148 1.23167877817465 -0.351908222335615 -2.77971949360051 0.0613173417705996 -5.04663621822667 -0.421556724672872 -2.08369466766877 0.168622689869148 -0.457690158216261 0.216800601260334 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POSITION A C G T 1 0.857143 0 0.142857 0 2 0.714286 0 0.285714 0 3 0.571429 0.285714 0.142857 0 4 0.285714 0.142857 0.571429 0 5 0 0.857143 0 0.142857 6 0.142857 0.285714 0.285714 0.285714 7 0.312024 0.47369 0.045118 0.169167 8 0.02631 0.902261 0.045118 0.02631 9 0.02631 0.759404 0.187976 0.02631 10 0.454882 0.187976 0.187976 0.169167 11 0.857143 0 0.142857 0 12 0.857143 0 0 0.142857 13 0.714286 0 0.142857 0.142857 14 0 1 0 0 15 0 0.571429 0.142857 0.285714 16 0 0 1 0 17 0 0.428571 0.142857 0.428571 18 0.285714 0.142857 0 0.571429 19 0.285714 0.428571 0.285714 0 20 0 0.285714 0.714286 0 21 0.142857 0 0.857143 0 22 0.571429 0 0 0.428571 23 0 0 0.142857 0.857143 24 0 0 0 1