| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,721,519 | +GG | 100% | intergenic (‑414/+32) | RCAP_rcc01588 ← / ← RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,721,519 | 1 | .→G | 100.0% | 92.5 | 29 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (7/22): ref base (0/0): total (7/22) | ||||||||||
| * | NC_014034 | 1,721,519 | 2 | .→G | 100.0% | 92.9 | 29 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (7/22): ref base (0/0): total (7/22) | ||||||||||
CGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..GGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCG > NC_014034/1721420‑1721602
||
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTCTTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACccgcc..g > 2:4465997/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGCGG.CGACccgccc > 2:1846478/1‑100 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACccgcc..g > 1:1462544/1‑101 (MQ=255)
gggTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..gg > 1:1364752/1‑101 (MQ=255)
gggTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..gg > 2:2882811/1‑101 (MQ=255)
ggTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..cgg > 2:3762528/1‑101 (MQ=255)
ggTTCCAAATAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..ggg > 2:3789447/1‑101 (MQ=255)
gTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACccgcccgcc > 1:93696/1‑97 (MQ=255)
gTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..cggg > 1:2336801/1‑100 (MQ=255)
gTTCCAAATAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..gggg > 2:801327/1‑100 (MQ=255)
ttCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..ggggg > 1:2129891/1‑99 (MQ=255)
ttCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..ggggg > 1:739642/1‑99 (MQ=255)
ttCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..ggggg > 2:3122376/1‑99 (MQ=255)
ttCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..cgggg > 1:279453/1‑99 (MQ=255)
ccAAATACCGCGCTGCGGCCCTCCCCCCCGCAGCTCTTTATTTT.T..GGCC.GGTCGCCTTGGGGTTTT.CCCCTC.GGCTGCGCCGAGG.CGCCCCGCC..gggggct < 2:2053279/101‑5 (MQ=25)
cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..ggggggcg > 2:3684818/1‑96 (MQ=255)
aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACccgcccgcgggggg > 1:3713574/1‑92 (MQ=255)
aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGGCCCGCC..gggggctgcg > 1:3880371/1‑94 (MQ=255)
aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..aggggcgggg > 2:1923828/1‑94 (MQ=255)
aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..GGGGGgcgcg > 2:666131/1‑100 (MQ=255)
cgCGGCCCCCCCCCCGGCATCTTTTTTTTTT.T..GGCC.GGTCGCTTTGGGGTTTC.CGCCGC.GGCGCCGCCGCGG.CCCCCCGCCGGGGGCTGCGCCCCCGGAcc < 2:1206055/100‑1 (MQ=255)
ggcggCCCCCCCCCCGCCG.GCTTTTTTTTGTG.GGCG.GGTCGCTTGGGGGTTTT.CCCCCC.GGCCGCCCGGGGG.CGCCCCGCCGGGGGCTGCGCCCCCGGAcc < 1:2220100/98‑1 (MQ=255)
gcgccccccccccccGCTGCTTTTTTTTTT.G..GGCC.GGCCGCGTGGGGTTTTC.CCCCGC.GGCCGCCCCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGAccc < 1:3789682/93‑1 (MQ=255)
ccctccccGCGGTGTTTTTTTTG.T..GCCT.GGTCGCCTTGGGTTTTT.CGCCGC.GGCTGCGCCGAGC.CGCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.a < 2:559297/96‑1 (MQ=255)
ctcccGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCC.AAGa > 2:3063816/1‑101 (MQ=21)
tcccGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGCTGAGGCCCCGGCccccccccccgcaa > 2:3207547/1‑95 (MQ=21)
cccGCGGGGTTTTTTTTG.T..GGCC.GGTCGCCGTGGGGTCTT.CCCCCA.GGCTGCCCCCCGGCCCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGAt < 1:3991448/101‑1 (MQ=9)
cccgcgtcttttTTTTT.T..GGGC.CGGCCCCTTGGGGTTTTCCCCCGC.GGCCGCCCGGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGAtc < 1:2289460/92‑1 (MQ=255)
gcggcgtTTTGTTTG.C..GGCC.GGGCGCTTGGGGGTTCT.CCCCGC.GGCTGCGCGGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCa < 1:3064004/98‑1 (MQ=255)
gCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGCTGCGCCCTCGGACCCCCCCCG.AAGATCTCa > 1:4625249/1‑101 (MQ=25)
cAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGCTGGGCCCCCGGACCCCCCCCggcgctctccg > 2:2345228/1‑91 (MQ=18)
cAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGCGGGGCCCCCGGACCCCCCCCG.CAGATCCCaa > 1:2150482/1‑100 (MQ=21)
gcggcTTTTTTTT.TGGGGCC.GGTCCCTTTGGGTTTCC.CCCCCC.GGCGGCCCCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCa < 1:1090555/98‑1 (MQ=255)
tttttttgggggCG.GGTCGCTTGGGGGTTTC.CCCCCC.GGCGGCCCCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCAc < 1:4474913/91‑1 (MQ=255)
tttttt.t..GGGC.GGTCCCCTTGGGGGTTTCCCCCGC.GGCGCCCCCGGGC.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCt < 2:2526406/99‑1 (MQ=12)
tttt.t..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGCTTCGCCCCCGGACCCCCCCCGCAAGTTCTCGATTCACCTTg > 2:2163428/1‑101 (MQ=17)
ttt.t..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCC.AAGATCTCAGATCACCTTGAc > 2:2257319/1‑101 (MQ=21)
t..GGCCGGGTCGCTGTGGGGTTTC.CCCCTG.GGCCGCGCGGGGC.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCt < 1:51998/101‑1 (MQ=16)
cc.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCCGGGGGGTGCGCCCCCCGGCCCCCCCCC.CAGAGCTCACATCACCCTTACCTGCgc > 2:3772751/1‑100 (MQ=12)
ggCCGTGGGGTTTTCCGCCGC.GCCGCCGCCGCGG.CGCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCg < 1:3193685/100‑1 (MQ=255)
cccgtgggggTTTC.CCCCCC.GGCCGCGCCGGGG.CGGCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGa < 1:4400418/95‑1 (MQ=18)
tggtggggttttt.CGCGTC.GGGGGCGCCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGAc < 1:2199125/91‑1 (MQ=255)
tGGGGGTTT.CCCCCCGGGCGGCGCGGCGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCgg < 1:1292593/101‑1 (MQ=255)
tgggtttcccGCCGC.GGCGCCGCCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCggg < 1:1846590/92‑1 (MQ=255)
tgcccccggggCGGCGCCGAGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGc < 2:2336668/92‑1 (MQ=255)
ccTC.CGCGGCGCCTGGC.CGCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATa < 1:2260433/101‑1 (MQ=255)
ccgcgggcgcgcCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATa < 2:3990548/93‑1 (MQ=255)
cc.GGCGGCGCCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATaaa < 1:3553250/100‑1 (MQ=37)
gatctaGG.CGACCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTc < 1:3143281/96‑1 (MQ=38)
gcCGAGG.CGACCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCg < 1:1269056/101‑1 (MQ=255)
||
CGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTT.T..GGCC.GGTCGCCTTGGGGATTT.CGCCTC.GGCTGCGCCGAGG.CGACCCGCC..GGGCTGCGCCCCCGGACCCCCCCCG.AAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCG > NC_014034/1721420‑1721602
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|