| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,056 | +T | 6.8% | intergenic (+104/‑138) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,056 | 1 | .→T | 6.8% | 37.9 ‑1.0 ‑1.6 | 161 | intergenic (+104/‑138) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (7/4): ref base (73/77): total (80/81) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.69e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.30e-02 | ||||||||||
Only 100 of 176 total aligned reads displayed.
GGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.A..G.CAGAAGGGGGGCAAGCG.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493956‑2494152
|
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGaa < 1:4475775/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:1520811/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t > 2:788864/1‑101 (MQ=255)
cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTAAA.TGGc > 1:789771/1‑101 (MQ=255)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.a < 1:3999310/101‑1 (MQ=255)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.a > 2:4291802/1‑101 (MQ=255)
tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aa > 2:98397/1‑100 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:4605223/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:480788/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 2:4121073/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc > 2:3871363/1‑97 (MQ=255)
cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc < 1:3577036/101‑4 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcca < 2:2546496/101‑6 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga > 2:617701/4‑94 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGAGATTTGCAGCAAGATGAAACCGGATACCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..G.aagccagaggg > 1:43063/1‑91 (MQ=18)
gCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AAGG.CAGAGggggg > 1:1601862/1‑101 (MQ=18)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGCa < 1:1431276/101‑1 (MQ=18)
gCGGACTCCCCCCGGGAAATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGCaga > 1:4734439/1‑99 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAC.TGGC..GAA..G.CCAGAGGGGGGCagcgc > 1:4638215/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGCagcgc > 1:4676075/1‑97 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGCagcgc > 2:172563/1‑97 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGACCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGCagcgc > 1:2769520/1‑97 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.c.c > 1:2725543/1‑101 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGCagcggcc > 2:2348947/1‑95 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.c.cc > 2:3025943/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.c.cc > 1:283443/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..GCCAG.AGGGGGGC.AGCG.c.ccc < 1:402027/101‑1 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.c.ccc < 2:196547/101‑1 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.c.ccccct < 2:848858/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.c.ccccct < 1:4471390/101‑3 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGAC.CCCCTGc > 2:1978451/1‑101 (MQ=17)
ccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.c.ccccctgcc < 2:4018385/101‑6 (MQ=17)
cGGAATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGccc < 1:2203745/101‑1 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGcccc > 1:3588006/1‑101 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcg < 1:4015443/101‑1 (MQ=0)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcg > 2:3750535/1‑101 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcgc > 1:4404457/1‑100 (MQ=2)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCcggcgg > 2:1445592/1‑101 (MQ=18)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCG.CACCCCTGCCCcggcgg > 2:2029738/1‑101 (MQ=18)
tttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcgccgga > 2:2605858/1‑100 (MQ=2)
tttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcgccgga > 2:2878051/1‑100 (MQ=2)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTGGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTcc < 1:3190927/101‑1 (MQ=17)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGt < 1:4346247/101‑1 (MQ=17)
agcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTg < 1:2414691/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggc < 1:2524071/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGG.AAGCGCC.CCCCTGCCCCGGCGGTCCGTggc > 1:345412/1‑101 (MQ=18)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggcgg > 2:1161814/1‑101 (MQ=18)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggcggc > 2:4232837/1‑101 (MQ=17)
aTGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGgcggcg > 2:1882578/1‑101 (MQ=18)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGcc > 1:2626861/1‑101 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGcc < 2:4421536/101‑1 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGG.AAGCGCC.CCCCTGCCCCGGCGGTCCGGGGCGGGGcc > 2:3683987/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGGA.TGGC..GAA..G.CCAGAGGGGGGCAGGGC.C.CCCCTGCCCCCGCGGTCAGAGGCGGCGccg > 1:4463056/1‑100 (MQ=12)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGAGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCt > 1:2831091/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:3335693/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg > 1:812992/1‑101 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:1041092/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:4640867/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATGTCCCGGGGGTTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg < 1:4552032/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGCcg > 1:1223598/1‑101 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg < 1:2311185/101‑1 (MQ=17)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg < 1:1172984/101‑1 (MQ=17)
tgctttacgtCTTGCCCGACATATTCCGGGGGGCAAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCCTGAcgggg > 2:142639/10‑100 (MQ=9)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 2:84451/1‑101 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:3228256/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:944117/101‑1 (MQ=17)
tttCATCTTCCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:4386003/101‑1 (MQ=17)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggg > 2:3581/1‑100 (MQ=18)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 1:3806231/1‑101 (MQ=18)
tCTTTCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:2176871/101‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 1:46093/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:4376916/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg > 2:1633663/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGGGCCACGAAGGGCCGGGGCGCgggg > 1:835590/1‑100 (MQ=9)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc < 1:617765/101‑1 (MQ=18)
gCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCa < 2:2094526/101‑1 (MQ=18)
gCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCa > 2:4636090/1‑101 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGGGCCTTGACGGGCGGGGGCGCGGGCAtt > 1:2628535/1‑101 (MQ=18)
ccGAAATACCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:2122/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:98413/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:56142/101‑1 (MQ=18)
gAAATATCCCGGGGGGCGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGGCCCTTCACGGGCGGGGGGGCGGGCATTaa > 2:1959993/1‑101 (MQ=12)
aaaTATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:4734183/101‑1 (MQ=18)
aaTATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 1:1127494/1‑101 (MQ=21)
aaTATCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 2:90304/1‑101 (MQ=21)
atatCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg > 1:1296638/1‑101 (MQ=21)
taccccGGGGGGTGAA.TGGC..G.A..A.GCCAGAGGGGGCCAGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 2:1329142/98‑1 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa > 2:1228239/1‑101 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 1:2278845/101‑1 (MQ=21)
atCCCGGGGGGGGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCGaa > 2:2821257/1‑101 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:4150127/101‑1 (MQ=21)
ggggggTGAA.TGGC..GAA..G.CCAGAGGGCGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:4254827/1‑101 (MQ=25)
gggTGAA.TGGC..GAA..GCCAG.AGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc > 1:3130257/1‑101 (MQ=25)
gggTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 1:2590566/101‑1 (MQ=25)
gggTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 1:749122/101‑1 (MQ=25)
ggTGAA.TGGC..GAA..GCCAG.AGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCGAAATTGCaaaa > 1:16817/1‑99 (MQ=21)
ggTGAA.TGGC..GAA..GCCAG.AGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa > 2:377256/1‑101 (MQ=25)
ggTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:2920432/101‑1 (MQ=25)
gTGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg < 1:3047534/101‑1 (MQ=25)
tGAA.TGGC..GAA..G.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:2132218/101‑1 (MQ=25)
|
GGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.A..G.CAGAAGGGGGGCAAGCG.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493956‑2494152
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|