| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 904,934 | +GC | 100% | intergenic (+38/‑158) | RCAP_rcc00821 → / → murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 904,934 | 1 | .→G | 100.0% | 39.6 | 164 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (84/66): ref base (1/13): total (85/79) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.16e-04 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.00e-01 | ||||||||||
| * | NC_014034 | 904,934 | 2 | .→C | 100.0% | 39.4 | 164 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (84/66): ref base (1/13): total (85/79) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.16e-04 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.71e-01 | ||||||||||
Only 100 of 177 total aligned reads displayed.
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTG.GCT..GC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTGCGGACGGGGGGC > NC_014034/904834‑905031
||
gggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGGGCTGCCCCCC.CCTTTTG.GCT..g > 1:1681769/1‑101 (MQ=255)
ggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..Gc > 1:2429349/1‑101 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..Gcgcc < 1:1186027/101‑4 (MQ=255)
gAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..Gcgcca < 2:3171964/101‑5 (MQ=255)
aGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..Gcgccaa < 1:1588462/101‑6 (MQ=255)
gCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..Gcgccaaa < 2:363125/101‑7 (MQ=255)
cGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..Gcgccaaaa < 2:282475/101‑8 (MQ=37)
cGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..Gcgccaaaa < 2:3242659/101‑8 (MQ=37)
tgctgcGCTGGACGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTTGGGGCGGGGGAGGGGGGCGCTGCCCCCCTC.GTTTG.GCT..Gcgctaaaatt > 1:3904403/1‑92 (MQ=25)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTc < 1:3853261/101‑1 (MQ=25)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGAGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTc < 1:4606020/101‑1 (MQ=25)
ctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCa < 1:2890388/101‑1 (MQ=25)
cgcTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGGGCTGCCCCCCTC.TTTTG.GCTGCGC..CACAATTCAccc > 1:2200259/1‑101 (MQ=25)
cTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGGACTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTTAccccc > 1:4007642/1‑101 (MQ=21)
cTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCAccccc < 1:1151868/101‑1 (MQ=25)
tGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCAcccccc < 2:2433260/101‑1 (MQ=21)
tGGCCGGTGCGGCGGCTCTTTGCCGCGATGAACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CCAAAATCAcccccc > 1:4226205/1‑101 (MQ=21)
tGGCCGGGGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCAcccccc < 1:2250421/101‑1 (MQ=21)
cGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCg < 2:216038/101‑1 (MQ=21)
ggTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGt > 2:2758757/1‑101 (MQ=21)
ggTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGt > 2:356191/1‑101 (MQ=21)
ggTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGt > 1:2843892/1‑101 (MQ=21)
ggTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCC.CCTTTTG.GCTGCGC..CAAAATTCCCCCCCCGGCGt > 2:4046564/1‑101 (MQ=21)
tGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CCAAATTTACCCCCCGGCGCAt > 2:2244705/1‑101 (MQ=21)
tGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGGAt > 2:1288684/1‑101 (MQ=21)
tGCGGCGGCGCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTAt < 2:286612/101‑1 (MQ=21)
gcggcgGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGATGGCCCCCTCTTTTTGCTGC..GC..CAAAATTCCCCCCCCGGCGTGtt > 1:4478073/1‑101 (MQ=255)
cggcggCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTAttt < 1:214760/101‑1 (MQ=21)
cggccgCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCCGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTAttt < 1:1269193/101‑1 (MQ=18)
ggcggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTg < 2:226556/101‑1 (MQ=21)
ggcggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCAC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTg > 2:546623/1‑101 (MQ=21)
gccgcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGc < 2:2984096/98‑1 (MQ=18)
ggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCAc > 1:3087841/1‑101 (MQ=21)
ggcTCTTGGCCGCGAGGCGCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCTCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCAc < 1:3572400/101‑1 (MQ=18)
gcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCAcc < 2:4154842/101‑1 (MQ=21)
ctctTTGCCGCGATGCACCGGCGCGACGGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCa < 2:723162/101‑1 (MQ=18)
tctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCCCCAg > 1:1764819/1‑101 (MQ=18)
tctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAg > 1:947129/1‑101 (MQ=21)
ctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAgg > 1:996684/1‑101 (MQ=21)
ctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAgg > 2:4434194/1‑101 (MQ=21)
tGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGaaa < 1:4295321/101‑1 (MQ=21)
gCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCCGCCGATTTGCACCCGGgaaa > 2:1643011/1‑101 (MQ=17)
cgcgATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAg < 2:4463484/101‑1 (MQ=21)
cgATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGcc > 2:3704511/1‑101 (MQ=21)
cgATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGcc > 2:699604/1‑101 (MQ=21)
gATGCACCTGCGTGACTGAGGGTTGGGCGGGGGGGCGCTGTCGCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCACGAAAAAGccc < 2:1893506/101‑1 (MQ=12)
aTGCAGCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg < 1:3719299/101‑1 (MQ=18)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg > 1:274218/1‑101 (MQ=21)
gCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGc > 2:70581/1‑101 (MQ=21)
gCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGc < 2:4369140/101‑1 (MQ=21)
cGGCGCGGCTGAGCGCGGGGCAGGGGGGCGCTGCCCCCCTC.TGTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttt < 2:1562359/101‑1 (MQ=18)
cGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttt < 1:535047/101‑1 (MQ=21)
ggCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGtttt > 2:917811/1‑101 (MQ=21)
gcgcGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttttt < 2:3744865/101‑1 (MQ=21)
cgcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTc < 2:4144997/101‑1 (MQ=21)
cgcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTc > 1:612552/1‑101 (MQ=21)
gACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTg > 2:3773198/1‑101 (MQ=21)
gACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTg > 2:3151128/1‑101 (MQ=21)
gACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTg > 2:2307710/1‑101 (MQ=21)
cTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.t > 1:1026588/1‑101 (MQ=21)
tGAGGGCGGGGCCGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.Tc > 1:2562507/1‑101 (MQ=21)
tGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.Tc > 2:1734657/1‑101 (MQ=21)
tGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.Tc > 2:1917820/1‑101 (MQ=21)
cGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATa > 2:382991/1‑101 (MQ=21)
ggggCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATAc > 2:830847/1‑101 (MQ=21)
ggggCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATAc < 2:2611650/101‑1 (MQ=21)
gggCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACg < 1:1862578/101‑1 (MQ=21)
ggCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGc > 2:1394614/1‑101 (MQ=21)
cAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTTG.TCGAAATACGCCg > 1:1607611/1‑101 (MQ=21)
cAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCg < 1:4433644/101‑1 (MQ=21)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgg > 1:3063381/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgg > 1:4501335/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgg > 1:2445052/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgg > 2:1679965/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgg > 2:1480114/1‑101 (MQ=25)
gggggCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgggg > 1:3713839/1‑101 (MQ=25)
gggggCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgggg > 1:3276711/1‑101 (MQ=25)
gggCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGTGTTTTTCCTGG.TCGAAATACGCCgggggg < 2:3904161/101‑1 (MQ=25)
gggCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCgggggg < 1:1327064/101‑1 (MQ=25)
ggCGCTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGa > 1:1014990/1‑101 (MQ=25)
cgatcTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGa < 1:3450892/97‑1 (MQ=25)
cgcTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGt < 2:1468955/101‑1 (MQ=25)
gcTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTc > 2:4524558/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTcc < 2:3584934/101‑1 (MQ=37)
cTGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTcc > 1:3242218/1‑101 (MQ=37)
tGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTcca > 2:2613606/1‑100 (MQ=37)
tGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCg < 1:1405022/101‑1 (MQ=37)
tGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCg < 1:4550607/101‑1 (MQ=37)
tGCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCg > 1:3926318/1‑101 (MQ=37)
gCCCCCCTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGaagatcg > 2:3450680/1‑95 (MQ=25)
cccccTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCtt > 1:790627/1‑101 (MQ=37)
cccccTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCtt < 1:2758921/101‑1 (MQ=37)
cccccTC.TTTTG.GCT..GCGACAAAATCCACCCCCCGGCGTATTTGCACCAGGAAAAACCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCtt < 2:1796961/101‑1 (MQ=21)
ccccTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTg > 2:2020917/1‑101 (MQ=37)
ccccTC.TTTTG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTg < 1:1286321/101‑1 (MQ=37)
tcttttG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTGCGGa < 2:1126535/99‑1 (MQ=37)
cttttG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc < 1:917888/100‑1 (MQ=255)
cttttG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc > 2:3340020/2‑101 (MQ=255)
ttttG.GCTGCGC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTGCGGACg > 1:2266999/1‑101 (MQ=255)
gggt..GC..CAAAGTTCCCCGACCGGAGTATTTGCACCA.GAAAAAACCCTGCCGTTTGCCTGGATCAAAACAGGCGGGGGGGAGTCCGCTTGCGGACGGGGGGc < 2:4007400/98‑1 (MQ=12)
||
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTG.GCT..GC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGG.TCGAAATACGCCGGGGGGAGTCCGCTTGCGGACGGGGGGC > NC_014034/904834‑905031
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|