Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	974,265	+C	100%	intergenic (+145/+114)	RCAP_rcc00884 → / ← RCAP_rcc00885	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,265	1	.→C	100.0%	72.1	21	intergenic (+145/+114)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (14/7):  ref base (0/0):  total (14/7)

ACCCGCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACA  >  NC_014034/974191‑974342                                                                            |                                                                                   ggggggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTg                                                           <  1:2159208/93‑1 (MQ=37) ggggggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCCGCGCCGCGGCTTGTTTTCCCCTTg                                                           >  1:3955099/9‑101 (MQ=21)  gggggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTTCCtttc                                                          >  1:3268012/8‑99 (MQ=25)      gcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTCGGACa                                                      >  2:4749671/4‑101 (MQ=37)       cttCGCGCCCCGGACCTCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaa                                                     <  1:806757/99‑1 (MQ=39)        ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTTTTTTTACCTTGCGACaaa                                                    >  2:1834877/2‑101 (MQ=38)        ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaaa                                                    >  1:2114159/2‑101 (MQ=255)          cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAata                                                  >  2:3249058/1‑101 (MQ=255)          cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAata                                                  <  1:2442066/101‑1 (MQ=255)           gCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAatat                                                 >  1:2477109/1‑101 (MQ=255)            ccccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTTCGACAAatata                                                >  1:3573428/1‑100 (MQ=38)            ccccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATc                                                <  2:3747520/101‑1 (MQ=255)            ccccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATc                                                <  1:3133/101‑1 (MQ=255)                ccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccccg                                            >  1:701768/1‑99 (MQ=255)                 cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTTCGACAAATATCCC.ggg                                          >  1:1145847/1‑101 (MQ=38)                  ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCGGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAAGATctctgcg                                          >  2:402386/1‑95 (MQ=37)                  ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATCCC.ggg.g                                        >  1:2187485/1‑101 (MQ=255)                  ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGGTTTCACCTTGGGAAAAATATACC.ggg.g                                        >  1:72345/1‑101 (MQ=38)                    aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cgg.ggg                                      >  1:152228/1‑99 (MQ=255)                        cccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAAAATCCC.ggg.gggccgg                                  >  2:958585/1‑95 (MQ=38)                         ccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggg.ggtccggg                                 <  1:1834986/101‑8 (MQ=39)                           aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTANCTTGCGACAAAAATCAC.ggg.gggcccgggg                               >  1:925668/1‑92 (MQ=255)                           aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggg.ggtccggggg                               >  2:4244008/1‑92 (MQ=38)                                                        ggcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGTGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc   <  2:2987509/101‑1 (MQ=14)                                                         gcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATAGCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACa  <  2:2114038/101‑1 (MQ=9)                                                                            |                                                                                   ACCCGCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACA  >  NC_014034/974191‑974342 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG