New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1224228	150 (0.870)	22 (0.130)	10/146	20.7	0.12	intergenic (‑100/+69)	hisF/hisA	imidazole glycerol phosphate synthase subunit HisF/1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino] imidazole‑4‑carboxamide isomerase
	?	NC_014034	2478698 =	169 (0.710)					intergenic (‑159/+98)	RCAP_rcc02304/RCAP_rcc02305	hypothetical protein/heme ABC transporter ATP‑binding/permease
Rejected: Position hash score below cutoff.

GGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA..................................................................  >  NC_014034/1224186‑1224228 ......................................................................CATTTCACCTTGGCCGAAATATCCCGGGGGGTGAATGGC  >  NC_014034/2478698‑2478736                                            |||||||||||||||||||||||||||                                        GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG          >  1:2250166/1‑101 (MQ=0) GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG          >  1:2278386/1‑101 (MQ=0) GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG          >  1:2802557/1‑101 (MQ=0)  GGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGT         <  2:3217510/101‑1 (MQ=0)   GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG        <  1:1398677/101‑1 (MQ=0)   GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG        <  2:3792446/101‑1 (MQ=0)    GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA       <  2:516685/101‑1 (MQ=0)    GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA       <  2:3097960/101‑1 (MQ=0)    GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA       <  2:3063181/101‑1 (MQ=0)     CTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAA      <  1:4304198/101‑1 (MQ=2)     CTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAA      <  1:3968447/101‑1 (MQ=2)     CTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAA      <  2:4461793/101‑1 (MQ=0)     CTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAA      <  1:1575221/101‑1 (MQ=0)      TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  2:251849/101‑1 (MQ=0)      TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  1:162586/101‑1 (MQ=0)      TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  2:416216/101‑1 (MQ=0)       CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    >  2:1659036/1‑101 (MQ=0)       CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    <  1:2314356/101‑1 (MQ=2)       CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    <  2:4577133/101‑1 (MQ=2)        TGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGc   >  2:1166402/1‑100 (MQ=0)        TGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGc   <  1:3110623/101‑2 (MQ=0)         GCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGcg  >  2:2996253/1‑99 (MQ=0)                                            |||||||||||||||||||||||||||                                        GGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA..................................................................  >  NC_014034/1224186‑1224228 ......................................................................CATTTCACCTTGGCCGAAATATCCCGGGGGGTGAATGGC  >  NC_014034/2478698‑2478736 Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG