New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1262153	264 (1.240)	2 (0.010)	2/180	30.9	0.01	coding (489/924 nt)	phnD	phosphonate ABC transporter periplasmic phosphonate‑binding protein PhnD
	?	NC_014034	= 3541889	172 (0.730)					coding (473/912 nt)	prpB	methylisocitrate lyase
Rejected: Position hash score below cutoff.

CCAAGCTGGAGGACGCCAAGGGCAAGGTCTTCGGCTTTGGCGATCCGAATTCGACCTCGGGCTATCTGATCCCCTCGGTCGAGATCCCGAAAACCCACCCCGCGATCACC....................................................................................................  >  NC_014034/1262044‑1262153 ....................................................................................................CGCGATCACCACCAGATGCCGCCGTGCCCGCACCGCCGCCGCGACCTTGGCCGCCATCTCGGCCGGGCTTGCTAGTTTCTTGTCGTTCAGATGGCCGCATTTCTTCGGCA  <  NC_014034/3541889‑3541790                                                                                                                                                                                                                                                  TCGGCTTTGGCGATCCGAATTCGACCTCGGGCTATCTGATCCCCTCGGTCGAGATCCCGAAAACCCACCCCGCGATCACCACCAGATGCCGCCGTGCCCGC                                                                                 >  1:161273/1‑101 (MQ=255)                                        GCGATCCGAATTCGACCTCGGGCTATCTGATCCCCTCGGTCGAGATCCCGAAAACCCACCCCGCGATCACCACCAGATGCCGCCGTGCCCGCACCGCCGCC                                                                        <  2:161257/101‑1 (MQ=255)                                                                                                                                                                                                                    CCAAGCTGGAGGACGCCAAGGGCAAGGTCTTCGGCTTTGGCGATCCGAATTCGACCTCGGGCTATCTGATCCCCTCGGTCGAGATCCCGAAAACCCACCCCGCGATCACC....................................................................................................  >  NC_014034/1262044‑1262153 ....................................................................................................CGCGATCACCACCAGATGCCGCCGTGCCCGCACCGCCGCCGCGACCTTGGCCGCCATCTCGGCCGGGCTTGCTAGTTTCTTGTCGTTCAGATGGCCGCATTTCTTCGGCA  <  NC_014034/3541889‑3541790 Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG