New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1292123 =	204 (0.940)	2 (0.010)	2/184	31.3	0.01	intergenic (+74/‑56)	RCAP_rcc01216/ureD	AsnC/Lrp family transcriptional regulator/urease accessory protein UreD
	?	NC_014034	= 2757960	220 (0.930)					coding (269/666 nt)	RCAP_rcc02567	resolvase
Rejected: Position hash score below cutoff.

CCGCCTGGCCATGGCTGCGTTGAAGACGGGGCTTGGTCGCAGAGTCGAACATGACCGCAGCAAACGCCCGGCGCGGGCGCGCGTCCATGTCGGGACAGAGGCGCGGCG....................................................................................................  <  NC_014034/1292230‑1292123 ....................................................................................................GCGCGGCGATGAAGGACACGCGGCGGGAGAGGCGGTCAAGCTTGGCGACCAGCAATTCGGCCCCGGTGCGGCGGCACAGGTCCAGCGCCTTGTTCAACTCTGGCCTGT  <  NC_014034/2757960‑2757861                                                                                                                                                                                                                                                         CAGAGTCGAACATGACCGCAGCAAACGCCCGGCGCGGGCGCGCGTCCATGTCGGGACAGAGGCGCGGCGATGAAGGACACGCGGCGGGAGAGGCGGTCAAG                                                                      >  2:2105742/1‑101 (MQ=255)                                           AGTCGAACATGACCGCAGCAAACGCCCGGCGCGGGCGCGCGTCCATGTCGGGACAGAGGCGCGGCGATGAAGGACACGCGGCGGGAGAGGCGGTCAAGCTT                                                                   <  1:2105863/101‑1 (MQ=255)                                                                                                                                                                                                                  CCGCCTGGCCATGGCTGCGTTGAAGACGGGGCTTGGTCGCAGAGTCGAACATGACCGCAGCAAACGCCCGGCGCGGGCGCGCGTCCATGTCGGGACAGAGGCGCGGCG....................................................................................................  <  NC_014034/1292230‑1292123 ....................................................................................................GCGCGGCGATGAAGGACACGCGGCGGGAGAGGCGGTCAAGCTTGGCGACCAGCAATTCGGCCCCGGTGCGGCGGCACAGGTCCAGCGCCTTGTTCAACTCTGGCCTGT  <  NC_014034/2757960‑2757861 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG