BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395396	163 (1.030)	41 (0.260)	6/134	22.4	0.20	intergenic (+208/‑723)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
*	?	NC_014034	1397632 =	174 (0.730)	41 (0.260)	6/134	22.4	0.20	coding (1514/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


CGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................  >  NC_014034/1395355‑1395396


...........................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCC  >  NC_014034/1397632‑1397675


                                          |||||||||||||||||||||||||||||||||


cgtggatccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                    >  2:3892539/11‑101 (MQ=0)


attggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                    >  2:1594426/11‑101 (MQ=0)


attggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGA                    >  1:4660915/11‑101 (MQ=0)


 ttggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  2:4681699/10‑101 (MQ=0)


 ttggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  1:4183820/92‑1 (MQ=0)


  tggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATC                  >  1:3397895/9‑101 (MQ=0)


   ggccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  2:479052/94‑1 (MQ=1)


   ggccccgGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  1:1592462/94‑1 (MQ=0)


    gccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                >  1:1367746/7‑101 (MQ=1)


    gccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                >  2:2799351/7‑101 (MQ=1)


    gccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                >  2:3398284/7‑101 (MQ=1)


    gccccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                >  2:3681033/7‑101 (MQ=1)


    gccccgGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:3354320/95‑1 (MQ=0)


      cccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  1:3889733/5‑101 (MQ=1)


      cccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  2:3920125/5‑101 (MQ=1)


       ccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  2:539112/98‑1 (MQ=1)


       ccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  2:853049/98‑1 (MQ=1)


       ccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  1:332461/98‑1 (MQ=1)


       ccgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  1:4547005/98‑1 (MQ=1)


        cgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT            <  1:783361/99‑1 (MQ=1)


        cgGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT            <  2:3392494/99‑1 (MQ=1)


          GTCGCGCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC          <  1:444856/101‑1 (MQ=1)


           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA         <  2:1301156/101‑1 (MQ=1)


           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACA         <  2:2572451/101‑1 (MQ=1)


            CGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAc        <  2:2162605/101‑2 (MQ=1)


            CGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAc        >  2:3670647/1‑100 (MQ=1)


             GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc       >  2:540992/1‑99 (MQ=1)


             GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc       >  2:360535/1‑99 (MQ=1)


             GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc       >  2:3148072/1‑99 (MQ=1)


             GCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAcc       >  1:738416/1‑99 (MQ=1)


              CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg      <  1:4446980/101‑4 (MQ=1)


              CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg      <  1:3614395/101‑4 (MQ=1)


              CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg      >  2:1027487/1‑98 (MQ=1)


              CTCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccg      >  1:1196683/1‑98 (MQ=1)


              CTCCCCCCGCGGGGGCGTAGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCACCGCGGGGGCGTGGATCGAAACTACAccg      >  2:802017/1‑98 (MQ=0)


               TCCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgg     <  2:832246/101‑5 (MQ=1)


                CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg    >  2:2816436/1‑96 (MQ=1)


                CCCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggg    >  1:2689073/1‑96 (MQ=1)


                 CCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggg   <  1:4606846/101‑7 (MQ=0)


                 CCCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccgggg   <  1:2188209/101‑7 (MQ=0)


                  CCCCGCGGGGGCGTGGATCGAAACAACTGACCCGGCAACGGCCTATGCGCTGGACGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAccggggc  <  2:3002206/101‑8 (MQ=0)


                                          |||||||||||||||||||||||||||||||||


CGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................  >  NC_014034/1395355‑1395396


...........................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCC  >  NC_014034/1397632‑1397675

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG