New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395432 =	165 (0.980)	31 (0.180)	9/142	20.9	0.15	intergenic (+244/‑687)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397940	190 (0.800)					intergenic (+244/+1654)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

AGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG.........................................................................  <  NC_014034/1395474‑1395432 ........................................................................CATAGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGTTGG  <  NC_014034/1397940‑1397897                                            |||||||||||||||||||||||||||||                                             caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGG                >  1:1155762/7‑101 (MQ=255) caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGG                >  1:237474/7‑101 (MQ=255) caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGG                >  1:3137707/7‑101 (MQ=255) caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGG                <  1:3178203/95‑1 (MQ=255) caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGG                >  1:3396233/7‑101 (MQ=255) caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGG                >  1:553680/7‑101 (MQ=255)    gctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGg             >  2:3271238/4‑100 (MQ=255)    gctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGA             <  2:3868803/98‑1 (MQ=255)     ctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAG            >  2:4299894/3‑101 (MQ=255)      tGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCTGCGGGGGGAGC           >  2:487497/2‑101 (MQ=255)      tGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGa           >  2:3593901/2‑100 (MQ=255)      tGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGC           >  2:4356712/2‑101 (MQ=255)       GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCG          >  2:952958/1‑101 (MQ=255)       GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCG          >  2:1475288/1‑101 (MQ=255)       GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCG          <  1:3236172/101‑1 (MQ=255)        ATGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGA         <  1:2148107/101‑1 (MQ=255)        ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGA         >  1:3925151/1‑101 (MQ=255)        ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGA         >  2:4298306/1‑101 (MQ=255)         TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGAC        >  2:2180027/1‑101 (MQ=255)         TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGAC        <  2:3137507/101‑1 (MQ=255)         TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGAC        >  1:1789498/1‑101 (MQ=255)         TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCACCCCTCATAG.GTTTCGGTCCACGCCCCCGCGGGGGGAGCGAC        >  1:1963394/1‑101 (MQ=255)          GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACg       <  1:1403779/101‑2 (MQ=255)           TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACga      <  1:3472069/101‑3 (MQ=255)            TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCATGCCCCCGCGGGGGGAGCGACgat     >  2:1202928/1‑98 (MQ=255)            TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACgat     >  2:544427/1‑98 (MQ=255)             TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatc    <  1:1030219/101‑5 (MQ=255)             TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatc    >  2:4581455/1‑97 (MQ=255)             TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatc    <  2:4208507/101‑5 (MQ=255)              CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatcg   <  1:3998324/101‑6 (MQ=255)               GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAG.GTTTCGATCCACGCCCCCGCGGGGGGAGCGACgatgga  >  1:450274/1‑95 (MQ=255)                                            |||||||||||||||||||||||||||||                                             AGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG.........................................................................  <  NC_014034/1395474‑1395432 ........................................................................CATAGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGTTGG  <  NC_014034/1397940‑1397897 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG