New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395500 =	152 (1.000)	69 (0.450)	13/128	16.7	0.27	intergenic (+312/‑619)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397000	221 (0.930)					coding (882/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GCACCGAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...................................................................................  <  NC_014034/1395541‑1395500 ..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGAAGC  <  NC_014034/1397000‑1396954                                           ||||||||||||||||||||||||||||||||||||                                                tggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGG                          <  1:1695958/91‑1 (MQ=0) tggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGG                          >  2:3727209/11‑101 (MQ=0) tggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGG                          >  2:1834208/11‑101 (MQ=0)  ggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGG                         >  2:1632631/10‑101 (MQ=0)  ggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGG                         >  1:2395349/10‑101 (MQ=0)  ggtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGG                         <  2:1963277/92‑1 (MQ=0)   gtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGANGCCGAGTTTCGATCCACGCCCCCGCGGGGG                        >  1:343683/9‑101 (MQ=0)   gtcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGG                        <  1:1927630/93‑1 (MQ=0)    tcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                       <  1:3268973/94‑1 (MQ=0)    tcatcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                       >  2:1378354/8‑101 (MQ=0)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      <  1:752793/95‑1 (MQ=1)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      >  2:1626684/7‑101 (MQ=1)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      <  2:4324036/95‑1 (MQ=1)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      >  2:666053/7‑101 (MQ=1)     catcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                      <  2:720919/95‑1 (MQ=1)      atcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                     <  2:2396717/96‑1 (MQ=1)      atcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                     <  1:1275756/96‑1 (MQ=1)       tcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                    <  1:2180151/97‑1 (MQ=1)       tcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                    >  2:3391550/5‑101 (MQ=1)       tcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                    <  1:3186402/97‑1 (MQ=1)       tcaaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                    >  1:4235447/5‑101 (MQ=1)        caaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                   <  2:39766/98‑1 (MQ=1)        caaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                   >  2:4342136/4‑101 (MQ=1)        caaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                   <  1:3519283/98‑1 (MQ=1)         aaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                  <  1:291247/99‑1 (MQ=1)         aaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                  <  1:3547491/99‑1 (MQ=1)         aaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCAACGCCCCCGCGGGGGGAGCGA                  <  1:4545124/99‑1 (MQ=1)         aaGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGAATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                  <  1:4737020/99‑1 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                 >  2:3752927/2‑101 (MQ=1)          aGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                 >  1:3054694/2‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC                <  1:3727439/101‑1 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC                >  1:1385337/1‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC                <  1:1548499/101‑1 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC                <  1:717343/101‑1 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCg               >  1:1380985/1‑100 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCg               >  1:4429291/1‑100 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgccg             >  2:3611578/1‑97 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCG             >  1:2937090/1‑101 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCG             >  2:3769493/1‑101 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCG             <  1:3755318/101‑1 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGC            >  2:43652/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGC            >  2:3100275/1‑101 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGCGCGACCGCGCA           >  2:3113748/1‑101 (MQ=0)                GATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCA           >  2:3794143/1‑101 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCA           <  2:2543597/101‑1 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCA           >  2:2356953/1‑101 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          <  1:1834317/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          >  2:2240109/1‑101 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAG          <  2:1637025/101‑1 (MQ=1)                 ATCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCACCCGCGGGGGGAGCGACCGCGCAG          >  1:1872634/1‑101 (MQ=0)                  TCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGa         <  1:392571/101‑2 (MQ=1)                  TCCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGa         >  2:241647/1‑100 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  1:1179849/1‑99 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        <  1:610194/101‑3 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  1:983142/1‑99 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  2:1355497/1‑99 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  1:2742549/1‑99 (MQ=1)                   CCACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGGTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGac        >  2:4033645/1‑99 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGaca       >  1:3573061/1‑98 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGaca       <  2:1886555/101‑4 (MQ=0)                     cCGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaa      <  2:4103109/100‑5 (MQ=0)                      CGCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaa     <  1:2979817/101‑6 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    >  1:1711065/1‑95 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    >  1:367655/1‑95 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    <  1:3787829/101‑7 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    <  1:1373812/101‑7 (MQ=0)                       GCCCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaag    >  1:1872227/1‑95 (MQ=0)                         CCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaagat  <  1:815114/101‑9 (MQ=0)                         CCCCGCGGGGGGAGCGACCAGCGCGCAATACGAGGCTGACCGGATCGAGGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCGCAGacaaagat  >  1:1841679/1‑93 (MQ=0)                                           ||||||||||||||||||||||||||||||||||||                                                GCACCGAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...................................................................................  <  NC_014034/1395541‑1395500 ..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACGCAGGCGGAAGC  <  NC_014034/1397000‑1396954 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG