New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395633 =	173 (1.070)	42 (0.260)	14/136	17.1	0.21	intergenic (+445/‑486)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1396201	136 (0.570)					coding (83/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CTACATGCAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1395676‑1395633 ............................................................................CGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGGC  <  NC_014034/1396201‑1396154                                             ||||||||||||||||||||||||||||||||                                                 gccgggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGG                         <  2:963819/94‑1 (MQ=255)  ccgggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGG                        <  1:3076399/95‑1 (MQ=9)   cgggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGG                       <  1:180246/96‑1 (MQ=9)   cgggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGG                       <  1:2465431/96‑1 (MQ=9)    gggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGG                      >  1:2336368/5‑101 (MQ=9)     ggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGG                     <  2:1243556/98‑1 (MQ=9)     ggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGGTTCGATCCACGCCCCCGCGGGGGG                     >  2:384634/4‑101 (MQ=9)     ggtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGGTTCGATCCACGCCCCCGCGGGGGG                     >  1:4640134/4‑101 (MQ=9)      gtCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGA                    <  2:2188085/99‑1 (MQ=14)       tCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  2:4495863/100‑1 (MQ=14)       tCAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  2:2866636/100‑1 (MQ=14)        CAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTTGATCCCCGCCCCCGCGGGGGGAGg                  >  2:2139342/1‑100 (MQ=255)        CAGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  2:1839639/101‑1 (MQ=14)        CAGTTGTTTCGAGCCACGCCCCCGCGGGGGGAGCGCCCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  2:793848/101‑1 (MQ=9)         agtTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                 <  1:2162729/98‑1 (MQ=11)         agtTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                 >  2:1878254/4‑101 (MQ=11)         agtTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCCCGGGGGGgggg                 >  1:1465664/4‑97 (MQ=2)          gtTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGGTTCGATCCACGCCCCCGCGGGGGGgggga                >  2:629091/3‑96 (MQ=2)           tTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC               <  2:1578492/100‑1 (MQ=11)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGC             <  2:3743746/101‑1 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGGTTCGATCCACGCCCCCCCGGGGGGAGCGACGC             >  2:1642759/1‑101 (MQ=0)              TTTCGATCCCCGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGCGGGAGCGACGCc            <  1:2572603/101‑2 (MQ=0)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCc            <  1:593761/101‑2 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCc            <  1:2101752/101‑2 (MQ=1)                TCGACCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGC          <  2:1161167/101‑1 (MQ=0)                 CGATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCt         <  2:1533877/101‑2 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGCCGCtg        >  2:2188290/1‑99 (MQ=0)                  GATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtg        <  1:1303178/101‑3 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtg        <  1:3301425/101‑3 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtg        <  2:2455730/101‑3 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtg        <  1:677315/101‑3 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtg        <  2:1355425/101‑3 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtgg       <  2:3074441/101‑4 (MQ=0)                   ATCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtgg       <  2:3313494/101‑4 (MQ=0)                    TCCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtgga      >  1:2249093/1‑97 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGCCGCtggaa     >  2:2525804/1‑96 (MQ=0)                      ccCGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtggaaa    <  1:1849143/99‑7 (MQ=0)                      CACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtggaaa    <  1:539163/101‑7 (MQ=0)                      CACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtggaaa    <  1:2776640/101‑7 (MQ=0)                       ACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtggaaaa   <  1:1916254/101‑8 (MQ=0)                       ACGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtggaaaa   >  2:1882607/1‑94 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACCGGGGCCAATGGCACGCTGTTCCAAGACGTGGCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCtggaaaac  <  2:3614176/101‑9 (MQ=0)                                             ||||||||||||||||||||||||||||||||                                                 CTACATGCAGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1395676‑1395633 ............................................................................CGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAGCGTGGCGGC  <  NC_014034/1396201‑1396154 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG