BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395665	179 (1.160)	60 (0.390)	10/130	18.9	0.27	intergenic (+477/‑454)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
*	?	NC_014034	1397368 =	148 (0.620)	60 (0.390)	10/130	18.9	0.27	coding (1250/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


CGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1395620‑1395665


.................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTTCAATGG  >  NC_014034/1397368‑1397409


                                              |||||||||||||||||||||||||||||||||||


ggcgccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGC                        <  2:2337909/91‑1 (MQ=0)


agctccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGC                        <  1:778089/91‑1 (MQ=0)


agcgccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGC                        <  2:344807/91‑1 (MQ=0)


agcgccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGC                        <  2:1377013/91‑1 (MQ=0)


 gcgccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCG                       <  1:4385259/92‑1 (MQ=0)


  cgccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGT                      <  1:1550738/93‑1 (MQ=0)


  cgccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGT                      <  1:3114525/93‑1 (MQ=0)


  cgccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGT                      <  2:2343916/93‑1 (MQ=0)


   gccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTG                     <  2:1584295/94‑1 (MQ=0)


    ccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGG                    <  1:806117/95‑1 (MQ=0)


    ccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGG                    <  2:1147668/95‑1 (MQ=0)


    ccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGG                    >  1:1694343/7‑101 (MQ=0)


    ccatcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGG                    <  2:3888619/95‑1 (MQ=0)


     catcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGg                   >  2:3250172/6‑100 (MQ=0)


     catcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGA                   <  1:474529/96‑1 (MQ=1)


      atcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  2:2583557/97‑1 (MQ=1)


      atcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  1:234407/97‑1 (MQ=1)


      atcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGAT                  >  2:2856420/5‑101 (MQ=1)


      atcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGAT                  >  2:1412737/5‑101 (MQ=1)


      atcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  1:1152879/97‑1 (MQ=1)


       tcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  2:3922464/98‑1 (MQ=1)


       tcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:1763941/98‑1 (MQ=1)


       tcgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATC                 >  1:4320376/4‑101 (MQ=1)


        cgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  2:2500938/3‑101 (MQ=1)


        cgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                <  2:1368405/99‑1 (MQ=1)


        cgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  2:1094777/3‑101 (MQ=1)


        cgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  1:3916306/3‑101 (MQ=1)


        cgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  1:3779748/3‑101 (MQ=1)


        cgAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCACCCCGCGGGGGCGTGGAGCG                >  2:595788/3‑101 (MQ=0)


         gAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA               >  1:1227347/2‑101 (MQ=1)


         gAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA               >  2:1944525/2‑101 (MQ=1)


          AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              >  2:495057/1‑101 (MQ=1)


          AGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              <  1:2839753/101‑1 (MQ=1)


           GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:4127270/101‑1 (MQ=1)


           GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:3785439/101‑1 (MQ=1)


           GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  2:2860061/101‑1 (MQ=1)


           GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGGGGATCGAAA             >  2:3968801/1‑101 (MQ=1)


            CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            >  1:3507245/1‑101 (MQ=1)


            CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            <  1:190012/101‑1 (MQ=1)


             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa           >  2:847278/1‑100 (MQ=1)


             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa           >  1:294467/1‑100 (MQ=1)


             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa           >  1:2982931/1‑100 (MQ=1)


              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACaa          >  1:4295948/1‑99 (MQ=1)


              TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACaa          >  1:297568/1‑99 (MQ=1)


               CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaa         >  1:717802/1‑98 (MQ=1)


               CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaa         >  2:3931156/1‑98 (MQ=1)


               CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaa         <  1:1252647/101‑4 (MQ=1)


               CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaa         >  1:2841537/1‑98 (MQ=1)


               CGCGCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaa         <  1:80453/101‑4 (MQ=1)


               CGCCCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaa         <  2:4499054/101‑4 (MQ=1)


                GCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaa        <  1:2129493/101‑5 (MQ=1)


                 CTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaa       <  1:1532140/101‑6 (MQ=1)


                 CTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaa       <  2:2679666/101‑6 (MQ=1)


                 CTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaa       <  2:2640752/101‑6 (MQ=1)


                  TCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaag      >  2:2120099/1‑95 (MQ=1)


                   CCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaagc     <  2:2064852/101‑8 (MQ=0)


                   CCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaagc     >  1:596667/1‑94 (MQ=0)


                    CCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaagcc    >  2:4235921/1‑93 (MQ=0)


                     CCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaagccg   >  2:2576132/1‑92 (MQ=0)


                      CCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaagccgc  <  2:301723/101‑11 (MQ=0)


                                              |||||||||||||||||||||||||||||||||||


CGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1395620‑1395665


.................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTTCAATGG  >  NC_014034/1397368‑1397409

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 24 ≤


ATCG

< 33 ≤


ATCG

< 38 ≤


ATCG