New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395795	168 (1.060)	20 (0.130)	2/134	26.5	0.11	intergenic (+607/‑324)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396166 =	147 (0.620)					coding (48/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

AAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.........................................................................  >  NC_014034/1395755‑1395795 ..........................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGA  >  NC_014034/1396166‑1396205                                          |||||||||||||||||||||||||||||||||                                         gaacaggatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGAT               <  1:3163728/92‑1 (MQ=0)    caggatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA            <  2:418461/95‑1 (MQ=1)    caggatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA            <  2:1680610/95‑1 (MQ=1)     aggatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA           <  2:4311944/96‑1 (MQ=1)     aggatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCCCGGGGGCGGGGATCGAA           >  2:2513342/6‑101 (MQ=0)     aggatGTCGCGCCCCCCGCGGGGGCGTAGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA           <  1:1994921/96‑1 (MQ=0)     aggatGTCCCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA           <  1:1355592/96‑1 (MQ=2)      ggatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          <  1:2634268/97‑1 (MQ=1)       gatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC         <  2:1324467/98‑1 (MQ=1)       gatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC         <  2:116664/98‑1 (MQ=1)       gatGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC         <  1:706452/98‑1 (MQ=1)        atGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGGGGGTCGAAAag        >  1:549027/3‑99 (MQ=0)         tGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgg       <  1:2245721/100‑3 (MQ=1)          GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggg      <  1:3243768/101‑4 (MQ=0)           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgggt     <  1:4107686/101‑5 (MQ=1)           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgggt     <  1:2719216/101‑5 (MQ=1)            CGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggggc    >  2:4744448/1‑96 (MQ=1)             gcgCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgggtcg   <  2:3018096/98‑7 (MQ=0)             GCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgggtcg   <  2:548976/101‑7 (MQ=0)              CTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGACCGAGTTCACGGCGGGCTATCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACGGGGCGA  >  1:153995/1‑101 (MQ=0)                                          |||||||||||||||||||||||||||||||||                                         AAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.........................................................................  >  NC_014034/1395755‑1395795 ..........................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGA  >  NC_014034/1396166‑1396205 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG