New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396064	125 (0.810)	58 (0.380)	11/130	18.2	0.31	intergenic (+876/‑55)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396099 =	128 (0.540)					intergenic (+911/‑20)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
Rejected: Position hash score below cutoff.

TCACGCCTGCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1396019‑1396064 .................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTCAT  >  NC_014034/1396099‑1396140                                               |||||||||||||||||||||||||||||||||||                                           acaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGg                        >  2:4218537/10‑100 (MQ=0) acaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGC                        <  1:1765657/92‑1 (MQ=0) acaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGC                        >  2:1733238/10‑101 (MQ=0) acaccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGC                        <  1:4621048/92‑1 (MQ=0)    ccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTG                     <  2:1096182/95‑1 (MQ=0)    ccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTG                     <  2:155169/95‑1 (MQ=0)    ccgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTG                     <  2:1660860/95‑1 (MQ=0)     cgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTGGCTCCCCCCGCGGGGGCGGGG                    >  2:21092/6‑101 (MQ=0)     cgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                    >  2:2274767/6‑101 (MQ=1)     cgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                    >  2:3767464/6‑101 (MQ=1)     cgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGG                    <  2:520386/96‑1 (MQ=1)     cgataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGG                    >  1:2719598/6‑101 (MQ=0)      gataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGA                   >  1:2759379/5‑101 (MQ=1)      gataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGA                   >  1:479829/5‑101 (MQ=0)       ataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCTCCCGCGGGGGCGTGGAT                  >  2:3783012/4‑101 (MQ=0)       ataCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGAT                  <  1:808751/98‑1 (MQ=1)        ttCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  2:4720600/99‑1 (MQ=1)        taCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:420244/99‑1 (MQ=1)        taCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                 <  1:347539/99‑1 (MQ=1)        taCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATC                 >  1:567312/3‑101 (MQ=1)        taCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCCCGGGGGCGGGGGTC                 >  1:1696221/3‑101 (MQ=0)         aCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  1:4254342/2‑101 (MQ=1)         aCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                >  2:631241/2‑101 (MQ=1)         aCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCG                <  2:2069985/100‑1 (MQ=1)          CCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               <  1:3658594/101‑1 (MQ=1)          CCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               <  1:2980127/101‑1 (MQ=1)          CCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGA               >  1:2046598/1‑101 (MQ=1)           CGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA              >  2:817919/1‑101 (MQ=1)            GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:4598345/101‑1 (MQ=1)            GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             >  1:3124721/1‑101 (MQ=1)            GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA             <  1:2342061/101‑1 (MQ=1)             cgtccgTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            <  2:79404/95‑1 (MQ=0)             CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            <  2:4048450/101‑1 (MQ=1)             CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC            >  1:4422136/1‑101 (MQ=1)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACg           <  1:783580/101‑2 (MQ=1)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACg           <  2:4076685/101‑2 (MQ=1)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACg           <  1:2216935/101‑2 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACgg          >  2:1251931/1‑99 (MQ=1)                CGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggt         <  1:883732/101‑4 (MQ=11)                CGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggg         >  2:235207/1‑98 (MQ=1)                CGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACggt         >  2:4436945/1‑98 (MQ=11)                 GCTCCCCCCGGGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtg        <  1:3344355/101‑5 (MQ=14)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtg        >  1:2550345/1‑97 (MQ=31)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtg        >  2:782510/1‑97 (MQ=31)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtg        >  2:3405435/1‑97 (MQ=31)                  ccCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgt       <  2:439335/99‑6 (MQ=17)                  CTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaggtgt       >  2:238838/1‑95 (MQ=17)                  CTCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgt       >  2:1868245/1‑96 (MQ=32)                   TCCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggggtc      >  2:3624334/1‑95 (MQ=11)                    CCCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtcc     >  1:625758/1‑94 (MQ=34)                     CCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtcca    <  1:1271523/101‑9 (MQ=35)                     CCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtcca    <  1:2724670/101‑9 (MQ=35)                     CCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtcca    <  1:3502971/101‑9 (MQ=35)                     CCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtcca    <  2:2626139/101‑9 (MQ=35)                     CCCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtcca    <  2:2327641/101‑9 (MQ=35)                      CCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtccag   <  1:720084/101‑10 (MQ=37)                      CCCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtccag   <  2:2553251/101‑10 (MQ=37)                       CCCGCGGGGGCGTGGATCGAAACATCGATGATCAAATCCGCAATCGGCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACggtgtccagc  <  2:4673500/101‑11 (MQ=38)                                               |||||||||||||||||||||||||||||||||||                                           TCACGCCTGCCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.............................................................................  >  NC_014034/1396019‑1396064 .................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTTTCGTCAT  >  NC_014034/1396099‑1396140 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG