| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | 1396166 = | 147 (0.930) | 20 (0.130) | 2/134 | 26.5 | 0.10 | coding (48/1578 nt) | RCAP_rcc01307 | hypothetical protein |
| ? | NC_014034 | = 1434381 | 210 (0.890) | intergenic (‑160/‑798) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
TCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.......................................................................... < NC_014034/1396205‑1396166
.........................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCCAGCAGGA < NC_014034/1434381‑1434341
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TCGCCCCGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAG < 1:153995/101‑1 (MQ=0)
cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGCGC > 2:3018096/7‑101 (MQ=0)
cgacccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGC > 2:548976/7‑101 (MQ=0)
gccccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCG < 2:4744448/96‑1 (MQ=1)
acccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA > 1:2719216/5‑101 (MQ=1)
acccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA > 1:4107686/5‑101 (MQ=1)
cccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGGGCGAC > 1:3243768/4‑101 (MQ=0)
ccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACa > 1:2245721/3‑100 (MQ=1)
ctTTTCGACCCCCGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACat < 1:549027/99‑3 (MQ=0)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc > 2:1324467/1‑98 (MQ=1)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc > 2:116664/1‑98 (MQ=1)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatc > 1:706452/1‑98 (MQ=1)
TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcc > 1:2634268/1‑97 (MQ=1)
TTCGATCCCCGCCCCCGGGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcct < 2:2513342/101‑6 (MQ=0)
TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATGGTTTCGATCCACGCCCCCGCGGGGGGAGGGACatcct > 1:1355592/1‑96 (MQ=2)
TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCTACGCCCCCGCGGGGGGCGCGACatcct > 1:1994921/1‑96 (MQ=0)
TTCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcct > 2:4311944/1‑96 (MQ=1)
TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctg > 2:1680610/1‑95 (MQ=1)
TCGATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctg > 2:418461/1‑95 (MQ=1)
ATCCACGCCCCCGCGGGGGGAGCGACGATAGCCCGCCGTGAACTCGGTCGAGCCAGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACatcctgttc > 1:3163728/1‑92 (MQ=0)
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TCGCCGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.......................................................................... < NC_014034/1396205‑1396166
.........................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCCAGCAGGA < NC_014034/1434381‑1434341
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|